Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 528 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

 Score =  265 bits (678), Expect = 3e-75
 Identities = 171/408 (41%), Positives = 224/408 (54%), Gaps = 41/408 (10%)

Query: 264 QEGTGEENRVMRLGSHAVVSNLLPILENGERTGL--VLTCQDITVVQRADQRIRSTRRP- 320
           ++  G+ N +   G+ AVV   L I +  E  G+  +      TV Q     +  TR   
Sbjct: 139 EDARGQINELKANGTEAVVGAGL-ITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197

Query: 321 ---------GAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQ 371
                     A   RY L  + G S    ++ Q    +A S + +LI GE+GTGKEL AQ
Sbjct: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257

Query: 372 GIHNE----SPRRQG----PFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA 423
            IH E       RQG    PFVA+NC A  ESLLE+ELFGYEEGAF+GSR+GG+ GLFE 
Sbjct: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317

Query: 424 AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDD 483
           AH GTLFLDEIG+MP+ LQTRLLRVL+E+EV R+G  +P+ +DVR+I+ATH +L   M  
Sbjct: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377

Query: 484 GDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALL---P 540
           G FR DL++RL+ILRLQ  PLRER  DI  +     +  L     P +A +   L     
Sbjct: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437

Query: 541 YLERYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKSS 600
            L  Y WPGN+REL N++ER  L    +     +  Q++  +LPEL      +PA     
Sbjct: 438 VLLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESAKTPA----- 491

Query: 601 GETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRLRS 648
                       +L   ++ LE   G+   AA  LGISRTT WRRL+S
Sbjct: 492 -----------PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528



 Score = 82.0 bits (201), Expect = 6e-20
 Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 62  KVDVFVCAGATAAYLRKHLTRPVLAMRVGSGDLLRALGQARERSSQVAVLSYNHVNHDLQ 121
           + D  + AG+  AYL+  L+ PV+ ++    D+L+AL +A + +S + V++Y      L 
Sbjct: 61  RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120

Query: 122 AMAALFTVQVHQAAYTSLEEARQAVEQAAQLGCRSIIGSSTVVELAEQAGLHGVLSLSED 181
           A    F +++ Q +Y + E+AR  + +    G  +++G+  + +LAE+AG+ G+   S  
Sbjct: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180

Query: 182 TARKALEEALGILDTQRVEIAKRRH 206
           T R+A  +A   LD  R+ +    H
Sbjct: 181 TVRQAFSDA---LDMTRMSLRHNTH 202