Pairwise Alignments

Query, 348 a.a., putative glycine betaine/L-proline ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 304 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 9e-14
 Identities = 81/335 (24%), Positives = 123/335 (36%), Gaps = 60/335 (17%)

Query: 13  ALLAALVPATASFAKDKIVIGEQNWTGAIAIQYILGDIISNR-LDGEVSYLAGDLPILFA 71
           AL +A V A AS   + + + +  W+   A   I G +++      +V  LA  +PI F 
Sbjct: 12  ALGSANVYADASC--ETVKMADPGWSDIAATNAITGFLLTGMGYKPKVDTLA--VPITFG 67

Query: 72  AAAKGDGSVDVLTDIWLPNQSAAFAKYVTGGTHSLIPNKQPYVGVQ-GFYIPGYIQDKYN 130
                DG VDV    W+P Q   + K+V  G   ++   +   G +    +P Y+ D   
Sbjct: 68  GLK--DGQVDVFLGNWMPAQQGFYDKFVANG--DVVQLAKNLDGTEFTLAVPDYVWDA-G 122

Query: 131 VKSVYDLKK--PEVAKLFAPLGGGKSQLLVGPAGWESTYIGQIKAKDFGFDGNFESVSTE 188
           V    DL     +  K    +G G       PA      I  IK  DF   G ++ V + 
Sbjct: 123 VHDFADLNHYADKFDKKIYGIGSG------APANISLQEI--IKKNDFEL-GQWKLVESS 173

Query: 189 ASVTYAKLDAAYKAERGVIFYAYTPDWIFSAYDLRRLDEPPFDGYAQDNKKGDPLYKADG 248
                A++  A K ++ V F  +TP  +     +R L             KG   Y  D 
Sbjct: 174 EQAMLAEVSRAVKKQKFVTFLGWTPHPMNVQLKMRYL-------------KGGEKYFGD- 219

Query: 249 CWKFISPTVDADWLNKSSITCAYPDAKVHILASSALRQRAPRIAAFLENVSIDPASLNDL 308
                                      V+ L      Q  P +   L N+S      N +
Sbjct: 220 ------------------------TGSVYTLTRKGYAQACPNVGKLLTNLSFTQEMENSI 255

Query: 309 ILKIEREKQPADAAAKAWVAANQATVDRWLSATGT 343
           + ++   K     AAKAW+ AN A +D+WL    T
Sbjct: 256 MAEVANNKVSNADAAKAWIKANPAVLDKWLEGVKT 290