Pairwise Alignments

Query, 348 a.a., putative glycine betaine/L-proline ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 338 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 81/347 (23%), Positives = 137/347 (39%), Gaps = 40/347 (11%)

Query: 5   LSRGLAGFALLAALVPATASFAKDKIVIGEQNWTGAIAIQYILGDIISNRLDGEVSYLAG 64
           L+  L    L  A +P +A  A+  +   + NW     I  +L  I+    D     L G
Sbjct: 8   LAASLTTLGLSVAALPVSA--AEAPVHFADLNWESGSLITEVLRVIVEKGYDLPTDTLPG 65

Query: 65  DLPILFAAAAKGDGSVDVLTDIWLPNQSAAFAKYVTGGTHSLIPNKQPYVGVQGFYIPGY 124
               L  A AK D  + V+ + W             G    L    +     +G+++P Y
Sbjct: 66  TTITLETALAKND--IQVIGEEWAGRSPVWVKAEAEGKVVGLGDTVKG--ATEGWWVPEY 121

Query: 125 IQD----------KYNVKSVYDLKK-PEVAKLFAPLGGGKSQLLVGPAGWESTYIGQIKA 173
           +               +KSV DL +  +V K   P   GK + L  P GW S  + + K 
Sbjct: 122 VVKGDPAKGIKPLAPELKSVKDLARYKDVFK--DPESPGKGRFLNSPIGWTSEVVNKQKL 179

Query: 174 KDFGFDGNFESV-STEASVTYAKLDAAYKAERGVIFYAYTPDWIFSAYDLRRLDEPPFDG 232
           K +G D ++ +  S   +   A++ ++ +  + V+FY ++P  +   Y L +L+EPPFD 
Sbjct: 180 KAYGLDDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLEEPPFDA 239

Query: 233 YAQDNKKGDPLYKADGCWKFISPTVDADWLNKSSITCAYPDAKVHILASSALRQRAPRIA 292
            A               WK ++   DAD  N +        +K+ I  S+  ++  P+IA
Sbjct: 240 EA---------------WKTLT---DAD--NPNPKPTRSLASKLSIGVSTPFQKEHPQIA 279

Query: 293 AFLENVSIDPASLNDLILKIEREKQPADAAAKAWVAANQATVDRWLS 339
            F E V      LN  +  +          A+ ++  +      WL+
Sbjct: 280 QFFEKVEFPIEPLNKALATMSENHTAPREVAQMFLKEHPQVWKAWLT 326