Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  244 bits (622), Expect = 4e-69
 Identities = 135/289 (46%), Positives = 177/289 (61%), Gaps = 2/289 (0%)

Query: 24  EDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAFSE 83
           E A    +L  + +VAPS ASVL++GE+GTGKELVAR IH  S RR+ PFVAVNC A  E
Sbjct: 149 ESAVFHHVLRQVTEVAPSRASVLLLGESGTGKELVARAIHYNSPRRDLPFVAVNCAAIPE 208

Query: 84  SLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQEREVV 143
           +L+E+ELFGH KGAFTGA   + G F   N GTLFLDEI D+P+ +Q K+LR LQE+   
Sbjct: 209 TLIESELFGHVKGAFTGATGVREGRFAAANQGTLFLDEIADMPLPVQAKVLRALQEQSFE 268

Query: 144 RLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILPLT 203
            +GS KS+ +DVR++AAT+  L K IAAG FR DLYYRL V  + L PLRER  DI+ L 
Sbjct: 269 PVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRMDLYYRLAVFPITLPPLRERTDDIVLLA 328

Query: 204 RHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDDLR 263
            HF+      +G     L+PEA+  L  Y WPGN+REL+N +    +V R  LV   DL 
Sbjct: 329 DHFLAAATRDMGKRVKGLTPEAQAMLTRYRWPGNVRELQNCMERAAIVARGDLVGPGDLL 388

Query: 264 LSHLRIERQDKSPVSTAESAEE--QLLRAFQRLFEEQAGGLHEKVEDSL 310
           L     +   +S     +   E  ++ R F     + +GG+  +  + L
Sbjct: 389 LFEANGDTDVQSHTLNGDLDSELSRIEREFVLQALKDSGGVQARAAEKL 437