Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  238 bits (606), Expect = 3e-67
 Identities = 132/322 (40%), Positives = 191/322 (59%), Gaps = 19/322 (5%)

Query: 29  QALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAFSESLVEA 88
           Q L   +++VAP++++VLI GE+GTGKELVAR +HNLS R   P ++VNC A  ESL+E+
Sbjct: 155 QDLYGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSKRAKAPMISVNCAAIPESLIES 214

Query: 89  ELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSR 148
           ELFGHEKGAFTGA A +AG  E  +GGTLFLDEIG+LP+  Q +LLRVLQE E+ R+GS 
Sbjct: 215 ELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSV 274

Query: 149 KSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILPLTRHFIK 208
           +S  +DVR++AAT+  L      G FREDLYYRL+V++L+L  LRER  D+  +   F+ 
Sbjct: 275 QSQKVDVRLIAATHRDLKSLAKIGQFREDLYYRLHVIALKLPALRERGADVNEIAHAFLL 334

Query: 209 TYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDDLRLSHLR 268
               R+   +++ +P+AE+ +  Y WPGN+RELEN +   +++  +  +  + L +    
Sbjct: 335 RQSARINRTDLKFAPDAEQAIRHYSWPGNVRELENAVERAVILSESPEISAELLGIDIEL 394

Query: 269 IERQDKSPVSTAESAEEQLLRAFQRLFEEQAGGLHEKVEDSLLRSAYRFC------HCNQ 322
            + +D   +  A S             +  +   HE  ED  L   ++        H  +
Sbjct: 395 SDLEDDDFIGLAPS-------------QGGSNTSHEPTEDLSLEDYFQHFVLEHQDHMTE 441

Query: 323 VHTASLLGLSRNITRARLIAIG 344
              A  LG+SR     R   +G
Sbjct: 442 TELARKLGVSRKCLWERRQRLG 463