Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  245 bits (625), Expect = 2e-69
 Identities = 130/277 (46%), Positives = 184/277 (66%), Gaps = 6/277 (2%)

Query: 10  PSLATSIRATAQVFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRR 69
           P+L  S+  T++  +  R       +QQVA ++ASVLI+GE+GTGKE+VAR++H  S RR
Sbjct: 140 PNLFRSLVGTSRAIQHVRQM-----MQQVADTDASVLILGESGTGKEVVARNLHYHSKRR 194

Query: 70  NGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAI 129
           +GPFV VNCGA    L+E+ELFGHEKGAFTGA+ ++AG FE  NGGTLFLDEIGD+P+ +
Sbjct: 195 DGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPM 254

Query: 130 QVKLLRVLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQL 189
           QVKLLRVLQER   R+GS K+  +DVR++AAT+  L+  I  G+FREDLYYRLNV  +++
Sbjct: 255 QVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEM 314

Query: 190 YPLRERPGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTL 249
            PLRER  DI PL  + + +       G +R +  A   L  + WPGN+REL N++    
Sbjct: 315 APLRERVEDI-PLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPGNVRELANLVERMA 373

Query: 250 LVCRNGLVQDDDLRLSHLRIERQDKSPVSTAESAEEQ 286
           ++   G++   +L      ++ +D+  V +  +  E+
Sbjct: 374 IMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRTDMEE 410