Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 308 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  247 bits (631), Expect = 3e-70
 Identities = 141/295 (47%), Positives = 183/295 (62%), Gaps = 12/295 (4%)

Query: 3   LLTLPPSPSLATSIRATAQVFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHI 62
           LLT P +     SIRA A VF D RS+ L   L+ +AP    VLI GETG+GKEL+ARHI
Sbjct: 11  LLTFPDAEKSPLSIRAKALVFVDPRSRQLREELESLAPRALPVLIRGETGSGKELLARHI 70

Query: 63  HNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEI 122
           H  S R  G FV+VNCGA S +  +AELFG+  G+ +G  +++AGWF   NGGTL+LDEI
Sbjct: 71  HRGSDR-TGLFVSVNCGAISPTYADAELFGYAAGSHSGTASSRAGWFGSANGGTLYLDEI 129

Query: 123 GDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRL 182
           GDLP+ IQVKLL  L+  EV R+G+ +  P+DVR+VAAT++ L +A+AAG F E L++ L
Sbjct: 130 GDLPLPIQVKLLAALENHEVTRVGAHQPSPVDVRLVAATSIDLAQAVAAGKFHERLFHYL 189

Query: 183 NVVSLQLYPLRERPGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELE 242
           +   L L  LRER GDIL L  +F+  Y  RL      +S  A+R L  + WPGN RELE
Sbjct: 190 SEGRLDLPALRERVGDILSLAEYFLGIYSQRLDLPVPLISDAAQRVLEHHSWPGNTRELE 249

Query: 243 NVIHHTLLVCRNGLVQDDDLRLSHLRIE------RQDKSPVSTAESAEEQLLRAF 291
           NVIH  LLV        D++   HL +        Q +    +A  AE++ LR F
Sbjct: 250 NVIHFALLVS-----SGDEILPEHLNLPVAGSPLEQVQRIFHSASPAEQETLRKF 299