Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  240 bits (613), Expect = 5e-68
 Identities = 137/323 (42%), Positives = 193/323 (59%), Gaps = 20/323 (6%)

Query: 29  QALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAFSESLVEA 88
           Q + + +++VAP++++VLI GE+GTGKELVAR +HNLS R   P ++VNC A  E+L+E+
Sbjct: 160 QDMYSKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIES 219

Query: 89  ELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRVLQEREVVRLGSR 148
           ELFGHEKGAFTGA A +AG  E  +GGTLFLDEIG+LP+  Q +LLRVLQE E+ R+GS 
Sbjct: 220 ELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSV 279

Query: 149 KSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERPGDILPLTRHFIK 208
           +S  +DVR++AAT+  L     AG FREDLYYRL+V++L+L  LRER  D+  +   F+ 
Sbjct: 280 QSQKVDVRLIAATHRDLKNLAKAGQFREDLYYRLHVIALKLPALRERGSDVNEIANVFLA 339

Query: 209 TYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGLVQDDDLRLSHLR 268
               R+G  ++  S EAE+ +  Y WPGN+RELEN +   +++  +  +  +   L  + 
Sbjct: 340 RQSARIGRDDLHFSAEAEQAIRHYSWPGNVRELENAVERAVILSESAEISAE---LLGID 396

Query: 269 IERQDKSPVSTAESAEEQLLRAFQRLFEEQAGGL-HEKVEDSLLRSAYRFC------HCN 321
           IE  D       ++A          L    AG   HE  ED  L   ++        H  
Sbjct: 397 IELSDLDEDDILDNA----------LVVANAGNASHEPTEDLSLEDYFQHFVLEHQDHMT 446

Query: 322 QVHTASLLGLSRNITRARLIAIG 344
           +   A  LG+SR     R   +G
Sbjct: 447 ETELARKLGVSRKCLWERRQRLG 469