Pairwise Alignments

Query, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 441 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  240 bits (613), Expect = 5e-68
 Identities = 130/273 (47%), Positives = 175/273 (64%), Gaps = 4/273 (1%)

Query: 18  ATAQVFEDARS-QALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAV 76
           AT ++  ++R  + L   L ++AP+E+ VLI GE+GTGKELVAR +H  S R   PF+A+
Sbjct: 134 ATHELLGESRPIRELRKLLGKLAPTESPVLIRGESGTGKELVARTLHRQSQRSEQPFIAI 193

Query: 77  NCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEIGDLPMAIQVKLLRV 136
           NCGA  E L+++ELFGHEKGAFTGA   K G  E  +GGTLFLDEIGDLP+ +Q  LLR 
Sbjct: 194 NCGAIPEHLIQSELFGHEKGAFTGAHQRKTGRIEAADGGTLFLDEIGDLPLELQANLLRF 253

Query: 137 LQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRLNVVSLQLYPLRERP 196
           LQE+ + R+G  + IP+DVRV+AAT+V L++AI  G FREDLYYRLNV+ +   PLR+R 
Sbjct: 254 LQEKHIERVGGSQPIPVDVRVLAATHVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRH 313

Query: 197 GDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELENVIHHTLLVCRNGL 256
           GD+  L  HF   Y    G      S  A   +  +DWPGN+REL N +   L++     
Sbjct: 314 GDLSMLANHFAHFYSVETGRRPRSFSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQ 373

Query: 257 VQDDDLRLSHLRIERQDKSPVSTAESAEEQLLR 289
           ++  DL L  L  E+Q   P+ T E  +++  R
Sbjct: 374 IEAQDLGLQLLDPEQQ---PLGTLEEYKQRAER 403