Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 308 a.a., rhizopine-binding protein from Pseudomonas simiae WCS417

 Score = 53.9 bits (128), Expect = 5e-12
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 15/240 (6%)

Query: 90  DAGRNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIPLFTI-----EVPS 144
           DA  +    + Q++  +  K DAVI      +      +   AA  PL  +     E   
Sbjct: 59  DAQGDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTL 118

Query: 145 QYAVNTISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSCGIRYDQLKLVSKFYPQ 204
              V T+++++   G L  + L   L GKG V +  G     +   R +  K V K +P 
Sbjct: 119 PKGVVTVASNDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPG 178

Query: 205 IEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGASQALIEAG--R 262
           I+ ++ +  D   +   D  S       ++     DAI A  D   +GA+ AL +AG  +
Sbjct: 179 IKVVEQQSADWQRSKGMDLTSNWLLAGTQF-----DAIVANNDEMAIGAAMALQQAGKAK 233

Query: 263 NEVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGEHDLPPETFV 322
            +V   G+DG P+ L  +++    + A V Q P      AV    R + GE  + PE +V
Sbjct: 234 GDVAIVGIDGLPDGLAAIKR--GLLTASVFQDPKAQATQAVQAAVRMIKGE-AIEPEVWV 290