Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 320 a.a., substrate-binding domain-containing protein from Variovorax sp. OAS795

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 32/322 (9%)

Query: 31  TRAMAAGADSGAEASATVPSLKGKRIAI---------STVGTSIYFDSRAFKAQVEEVQR 81
           TR +A  A + A A A++P+   +++ +         S +G   Y+ ++A K   +E + 
Sbjct: 5   TRRIALTAVAAA-AFASLPAFAAEKVNLGVSIPAATHSFMGGINYWANQAKKDLEKEHKD 63

Query: 82  LGGTPITLDAGRNDKAMVTQLQNLVTL-KPDA-VIHTLGTLSIIEPWFKRISAAGIPLFT 139
           L    IT+    N      QLQ+L T+ K +A V+    + ++ +P   ++ A G  +  
Sbjct: 64  L---KITIKTAANAPEQANQLQDLSTVTKINALVVFPFESAALTKP-VAQVKAKGAYVTV 119

Query: 140 IE-----VPSQYAVNTISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSCGIRYDQ 194
           ++       +Q A   ++ DN + G + A+ +   L GKG V+   G         R D 
Sbjct: 120 VDRGLTDTSAQDAY--VAGDNTAFGRIPAEYIAKQLGGKGNVVALRGI-ATTLDNERMDA 176

Query: 195 LKLVSKFYPQIEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGAS 254
              V K +P I+ +  +  +       DA       L ++    +DAIWAA D   +G  
Sbjct: 177 FNAVLKNHPDIKLLDAKYANW---NRDDAFKVTQDYLTRFKN--IDAIWAADDDMAVGVL 231

Query: 255 QALIEAGRNEVRTY--GVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAG 312
           +A+ +A R++++    G      V  ++      + A V+  P  I           L G
Sbjct: 232 KAIEQAKRDDIKIVFGGAGAKGMVKSIMDGKDKRIGADVSYSPKFIYDAIKLTAEARLKG 291

Query: 313 EHDLPPETFVETLLTTAGNVDD 334
           E  LP  T + ++L T  N  D
Sbjct: 292 E-KLPATTIIPSVLITKENAKD 312