Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 354 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  105 bits (263), Expect = 1e-27
 Identities = 95/319 (29%), Positives = 144/319 (45%), Gaps = 18/319 (5%)

Query: 22  LALGLAA-PLTRAMAAGADSGAEASATVPSLKGK-RIAISTVGTSIYFDSRAFKAQVEEV 79
           +AL L A  L  A+   A + A   A + +  G  RIA+     S    ++     ++E 
Sbjct: 4   IALSLVALGLLTALPGFAATPAPLPAAIANHDGPIRIAVIRNLGSDDNTTQFIAGAIQEG 63

Query: 80  QRLGGTPITLDAGRNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIPLFT 139
           ++LG    T  +  +D      +   ++ K D +I + G         K+   AGI +  
Sbjct: 64  KKLGFKVSTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVSV 123

Query: 140 I------EVPSQYAVNTISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSCGIRYD 193
                  E+P    V     D+ S   L   QL  D  GK  ++      G P    R  
Sbjct: 124 FDTAVNGEIPG---VTVTQQDDASLTNLSFGQLAKDFNGKANIVKL-WVAGFPPMERRQA 179

Query: 194 QLKLVSKFYPQIEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGA 253
             K++ K YP I+ ++  +  V  +   D  ++V A+L KYPKG++DAIW  WD    GA
Sbjct: 180 AYKVLQKQYPDIKELE-SIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGA 238

Query: 254 SQALIEAGRNEVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGE 313
            +AL E GR E++ Y +D + + L+L+R+PGS     VA  P LIG T V  VA  +AGE
Sbjct: 239 YKALKENGRTEIKLYSIDISNQDLQLMREPGSAWKVSVAVDPKLIGATNVRLVANKIAGE 298

Query: 314 -----HDLPPETFVETLLT 327
                +D       + LLT
Sbjct: 299 ATPATYDFKAAAIPQALLT 317