Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Dickeya dianthicola ME23

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 34/295 (11%)

Query: 33  AMAAGADSGAEASATVPSLKGKRIAISTVGTSIYFDSRAFKAQVEEVQRLGGTPITLDAG 92
           A++A   + A A  T+       + +ST+    +F S    AQ +E  +LG   + LD+ 
Sbjct: 14  ALSAAVSANALAKDTIA------LVVSTLNNP-FFVSLKDGAQ-KEADKLGYNLVILDSQ 65

Query: 93  RNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIPLFTIE--VPSQYAVNT 150
            N    ++ +Q+L       ++      + +    K  + A IP+ T++    S   ++ 
Sbjct: 66  NNPAKELSNVQDLTVRGTKLLLINPTDSNAVGNAVKLANQAKIPVITLDRVAASGEVISH 125

Query: 151 ISADNWSTGLLLAKQLVADLRGKG-RVLLFNGFYGVPSCGIR-------YDQLKLVSKFY 202
           +++DN + G  +A   +A   G+G +V+   G  G  +   R        ++ K      
Sbjct: 126 VASDN-AFGGKVAGDFIAKKLGEGAKVIQLEGLAGTSAARERGAGFIKSAEKNKFAMLAS 184

Query: 203 PQIEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGASQALIEAGR 262
              +F + +  +V+ N           LL  +P  ++ A++A  D   LGA +AL  AGR
Sbjct: 185 QPADFDRTKGLNVMQN-----------LLTAHP--DVKAVFAQNDEMALGALRALQTAGR 231

Query: 263 NEVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGEHDLP 317
           ++V   G DGT + ++ +   G  +AA VAQ+P  IG   V    + L GE   P
Sbjct: 232 DDVLVVGFDGTADGVKAVE--GGKLAATVAQRPEQIGIIGVETADKVLKGEKVQP 284