Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 358 a.a., sugar ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  102 bits (253), Expect = 2e-26
 Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 6/298 (2%)

Query: 20  AMLALGLAAPLTRAMAAGADSGAEASATVPSLKGK-RIAISTVGTSIYFDSRAFKAQVEE 78
           A+LAL L A  +   A    +     A + + +G  RIA+     S    ++     +EE
Sbjct: 7   ALLALSLTASFSTLAAQTPATAVPVPAVIANHQGPVRIAVIRNLGSDDNTTQFVSGVLEE 66

Query: 79  VQRLGGTPITLDAGRNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIPLF 138
            ++LG    T  +  +D      +   ++ K D +I + G         +RI  +GI + 
Sbjct: 67  GKKLGFKVSTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRAPYSTGLIQRIVDSGINVA 126

Query: 139 TIEVPSQYAVNTISADNWSTGLLLAK---QLVADLRGKGRVLLFNGFYGVPSCGIRYDQL 195
             +      +  ++        L  +   QLV D  GK  ++      G P    R    
Sbjct: 127 VFDTAVDKTIPGVTVTQQDDASLANESLGQLVKDFNGKANIIKL-WVAGFPPMERRQTAY 185

Query: 196 KLVSKFYPQIEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGASQ 255
           + + K  P I+ ++  +  V  +   D  ++V A+L KYPKG++DAIW AWD    GA +
Sbjct: 186 QQILKDNPGIKELE-SIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGAWDAFSQGAYK 244

Query: 256 ALIEAGRNEVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGE 313
           AL E GR E++ Y +D + + L+L+R+  SP    VA  P LIG+  +  VA  +AGE
Sbjct: 245 ALKENGRTEIKLYSIDISNQDLQLMREANSPWKVSVAVDPKLIGKVNLRLVANKIAGE 302