Pairwise Alignments

Query, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

Subject, 309 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 76/323 (23%), Positives = 137/323 (42%), Gaps = 31/323 (9%)

Query: 14  LLGASSAMLALGLAAPLTRAMAAGADSGAEASATVPSLKGKRIAISTVGTSIYFDSRAFK 73
           +L  S+A+LAL L          G+ + AE          K+I ++       F ++  +
Sbjct: 6   ILLTSAALLALSL----------GSANAAEV---------KKIGLAVANLQANFFNQIKQ 46

Query: 74  AQVEEVQRLGGTPITLDAGRNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAA 133
           A   E +  G   +T+DA  +    V Q+Q+L+T   DA+I+     +      K   AA
Sbjct: 47  AVEAEAKTRGIAVVTVDAKGDGPTQVNQIQDLLTQNIDALIYIPAGAAAATVPVKLAKAA 106

Query: 134 GIPLFTIEVPSQYAVNT--ISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSCGIR 191
           G+P+  I+  +  A     ++ D+ ++   +   ++    G G++++ +G  G      R
Sbjct: 107 GVPVINIDRNADGAPGDTFLATDSVASAKSVCDYIIKQAGGAGKMVIIHGQKGTTPEVDR 166

Query: 192 YDQLKLVSKFYPQIEFIQPELRDVIPNTVQDARSQVAA-LLNKYPKGELDAIWAAWDLPQ 250
                   K    ++ +  +  ++     QD   Q+   +L   P  ++  ++A  D   
Sbjct: 167 TKGCMESVKANSGVKIVAEQWSNM---WSQDEGFQIMQNMLQANP--DVSIVFAQADGLA 221

Query: 251 LGASQALIEAGRNE-VRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARY 309
           LGA+QA+  A  ++ +   G DG    LE L+     V A   QQ   +GR AV    + 
Sbjct: 222 LGAAQAIKVANPSQKIVVGGFDGDTAALEALKNGVFDVTA--TQQTQKMGRMAVEMAVKI 279

Query: 310 LAGEHDLPPETFVETLLTTAGNV 332
           + GE  +P     +  LTT  NV
Sbjct: 280 VGGE-KVPAVQLSDATLTTKENV 301