Pairwise Alignments

Query, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 309 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  334 bits (856), Expect = 2e-96
 Identities = 179/309 (57%), Positives = 222/309 (71%), Gaps = 16/309 (5%)

Query: 1   MNFFLETLIGGLLAGTLYSLVAIGFVLIYKASGVFNFAQGAMLLFAALTFVSLHE----- 55
           M FFLETL GGL+ G LYSL+AIGFVLIYKASGVFNFAQGAM+LFAAL      E     
Sbjct: 1   MGFFLETLFGGLMVGMLYSLIAIGFVLIYKASGVFNFAQGAMVLFAALAMARFSEWFPLW 60

Query: 56  -----QGLPFALALALTVLVMIVGALLIERLVLRPLVNRSQITLFMATLGLSFIIEGLAQ 110
                Q L   LA    + VM+V A LIERL L  LVN+  ITL MATLG+++ ++G+ Q
Sbjct: 61  FGFQSQILANILAFVAAMAVMVVVAWLIERLALSKLVNQEGITLLMATLGIAYFLDGIGQ 120

Query: 111 GLMGAQVRALDLGIEDVPLFV------GELMISQFDLVASGVSALLVAVLALLFNKTRIG 164
            L G  +  +D+G+   PL V      G L++SQ DL+A+ V+A LV VLA+ F KT  G
Sbjct: 121 TLFGNDIYKIDVGMPKEPLMVLEGTFQGGLLLSQEDLIAALVAAGLVVVLAIFFQKTATG 180

Query: 165 VALRAVADDTRAALSLGINLNRIWQIVWAVAGMVGLVAGLLWGARQGVQFSLSLVVLKAL 224
            ALRAVADD +AA S+GI L RIW IVW+VAG   LVAG++WG++ GVQFSLSLV LKAL
Sbjct: 181 RALRAVADDHQAAQSIGIPLKRIWVIVWSVAGFSALVAGIIWGSKLGVQFSLSLVALKAL 240

Query: 225 PVLIIGGFTSIGGAIVGGLIVGAAENLAEAYIGPLIGGGITPWFAYFLALIFLYIRPAGL 284
           PV+I+GG TSI GAI+GGL++G  E L+E Y+GP++GGGI  WFAY LAL+FL +RP GL
Sbjct: 241 PVVILGGLTSIPGAIIGGLLIGVGEKLSEIYLGPMLGGGIEIWFAYVLALVFLLVRPQGL 300

Query: 285 FGDRAIERV 293
           FG++ I+RV
Sbjct: 301 FGEKIIDRV 309