Pairwise Alignments

Query, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 300 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  142 bits (358), Expect = 9e-39
 Identities = 87/292 (29%), Positives = 162/292 (55%), Gaps = 12/292 (4%)

Query: 3   FFLETLIGGLLAGTLYSLVAIGFVLIYKASGVFNFAQGAMLL---FAALTFVSLHEQGLP 59
           F  + ++ G++ G++Y+L+A+  V+++K + V NF+QG + +   +AAL    L   G P
Sbjct: 9   FVQQGVLSGIVTGSVYALLAVAIVMVFKTTDVPNFSQGEIFMAGGYAAL--FPLVVWGWP 66

Query: 60  FALALALTVLVMIVGALLIERLVL-RPLVNRSQ-ITLFMATLGLSFIIEGLAQGL-MGAQ 116
           +  A+  ++ V  + A L +R+V+ R   +R   + L +ATLG +++++GL +   +G  
Sbjct: 67  YWGAVLASIAVTALLAALFQRVVMQRVTASRGVGVQLVIATLGFAYLLKGLVRKTGLGDT 126

Query: 117 VRALDLGIEDVPLFVGELMISQFDLVASGVSALLVAVLALLFNKTRIGVALRAVADDTRA 176
            R+L   +   P+ +G+  ++  DL   G + +++ +L L+F +TR G A+RAV  + R 
Sbjct: 127 PRSLPSLVPQDPIMIGQASLTLLDLAIFGSAVVVMVLLYLMFTRTRTGQAMRAVGMNPRG 186

Query: 177 ALSLGINLNRIWQIVWAVAGMVGLVAGLLWGARQGVQFSLSLVVLKALPVLIIGGFTSIG 236
           A  +G+ L  I   +WA+ G++  ++ LL   +  +   +  + + A    I+GGFTS+ 
Sbjct: 187 AQIVGVKLGSIRMKIWALTGVISAISALLITPKILITPDIGHIAILAYAAAIVGGFTSLP 246

Query: 237 GAIVGGLIVGAAENLAEAYIGPLIGGGITPWFAYFLALIFLYIRPAGLFGDR 288
           GA+VGG I+G  ENL    +G  I         +   ++ L +RP GL G +
Sbjct: 247 GAVVGGFIIGIVENL----VGLFISSNAIVVAPFVAIMVVLLVRPQGLLGGK 294