Pairwise Alignments

Query, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  124 bits (311), Expect = 3e-33
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 24/307 (7%)

Query: 4   FLETLIGGLLAGTLYSLVAIGFVLIYKASGVFNFAQG---------AMLLFAALTFVSLH 54
           FL+ L+ GL  G++Y L+AIG+ ++Y   G+ NFA G         A +  A L +  + 
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64

Query: 55  EQGLPFALALALTVLVMIVGALLIERLVLRPLVNRSQITLFMATLGLSFIIEGLAQGLMG 114
              L     L  T++V  V    IER+  +PL N +++   ++ +G+S I++  AQ   G
Sbjct: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124

Query: 115 AQVRALD------LGIEDVPLFVGELMISQFDLVASGVSALLVAVLALLFNKTRIGVALR 168
           A+ + +       + +E    FV       F LVA+ V    + +L  +   T++G   R
Sbjct: 125 ARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVG---MGLLTYVIKYTKLGRMCR 181

Query: 169 AVADDTRAALSLGINLNRIWQIVWAVAGMVGLVAGLLWGARQGV-QFSLSLVV-LKALPV 226
           A   D + A  LGIN +R+   V+ +  ++  +AG+L     G   F    ++ +KA   
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTA 241

Query: 227 LIIGGFTSIGGAIVGGLIVGAAENLAEAYIGPLIGGGITPWFAYFLALIFLYIRPAGLFG 286
            ++GG  S+ GA++GG+I+G +E+L       LI       F++ L ++ L  RP GL G
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESL----FSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297

Query: 287 DRAIERV 293
              + +V
Sbjct: 298 RPLVAKV 304