Pairwise Alignments

Query, 265 a.a., putative Exodeoxyribonuclease III from Pseudomonas putida KT2440

Subject, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

 Score =  166 bits (419), Expect = 6e-46
 Identities = 103/270 (38%), Positives = 144/270 (53%), Gaps = 16/270 (5%)

Query: 4   LKIATFNINGIRSRLPALLAWLEREQPDIACLQELKAADQQFPRAELEAAGYGSLHHGQP 63
           +KI  FNING+R+R   L A +E+ QPD+  LQE K +D QFP A+++A GY   +HGQ 
Sbjct: 1   MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK 60

Query: 64  SWNGVAILVRGSDPLEVRRGLPGLEEDSQSRYL-----EAAAHGVLVACLYLPNGNPLPG 118
              GVA+L R   PL + +G    EED+Q R++     +A    + +   Y P G     
Sbjct: 61  GHYGVALLSR-QPPLSLHKGFATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGESRDH 119

Query: 119 P-KFDYKLHWFECLIQHARSLQESGHPTLLAGDFNVVPTDMDI----YNPRSWLKDALLQ 173
           P KF  K  ++  L     S   +  P L+ GD N+ P D DI     N + WLK     
Sbjct: 120 PTKFPAKQRFYSDLQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCS 179

Query: 174 --PESRACYQRLLDQGWLDAIRHLYPDERVYTFWDYFRNHWARN---AGLRIDHLLLNRE 228
             PE R   +RL   G +D+ RHLYPD      W  +R+    +    GLRID ++ +++
Sbjct: 180 FLPEEREWMERLKGWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQ 239

Query: 229 LAPYLKRAGVDAWVRNQAKASDHAPVWIEL 258
           L P +K AGVD  +R   K SDHAP+W+EL
Sbjct: 240 LVPRIKAAGVDYELRGMEKPSDHAPIWLEL 269