Pairwise Alignments

Query, 595 a.a., quinoprotein ethanol dehydrogenase from Pseudomonas putida KT2440

Subject, 393 a.a., outer membrane protein assembly factor BamB from Dickeya dianthicola ME23

 Score = 58.9 bits (141), Expect = 4e-13
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 55  RYSPLDLLNVNNVKELRPVWAFSFG-GEKQRGQQAQPLIKDGVMYLTGSYSRVFAVDART 113
           + SPL    V N      VW+ S G G  +      P+ +D  +Y    +  V A+D  +
Sbjct: 31  KMSPLP--QVTNQFTPTKVWSRSVGDGIGEFYSNLHPIWQDSRVYAADRHGTVKALDLNS 88

Query: 114 GKKLWQYDAR----LPDDIRPCCDVINRGVALYGNLVFFGTLDAKLVALNKDTGKVVWSK 169
           G++ W+ D      L    RP   +++ GVA+ GN V+ G+  A+L ALN D G + W  
Sbjct: 89  GEEKWRADLAEKTGLLSSNRPA--LLSGGVAVSGNHVYVGSERAQLFALNADDGTLQWQT 146

Query: 170 KVADHKEGYSISAAPMIVNGKLITGVAGGEFGVVGKIQAYNPENGELLW 218
           KVA       + ++P++ +G +I   +       G +QA +  +G + W
Sbjct: 147 KVAG-----EVLSSPVVSDGMVIIHTSN------GMLQALSESDGTIKW 184



 Score = 42.4 bits (98), Expect = 4e-08
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 467 DYIGVLRAIDPVSGKEVWR----------HKNYAPLWGGVLTTKGNLVFTGTPEGFLQAF 516
           D  G ++A+D  SG+E WR            N   L  G +   GN V+ G+    L A 
Sbjct: 76  DRHGTVKALDLNSGEEKWRADLAEKTGLLSSNRPALLSGGVAVSGNHVYVGSERAQLFAL 135

Query: 517 NAKTGDKVWEFQTGSGVLGSPV 538
           NA  G   W+ +    VL SPV
Sbjct: 136 NADDGTLQWQTKVAGEVLSSPV 157



 Score = 42.4 bits (98), Expect = 4e-08
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 90  PLIKDGVMYLTGSYSRVFAVDARTGKKLWQYDARLPDDIRPCCDVINRGVALYGNLVFFG 149
           P++   V+Y  G    + A+D R+G+  W+ +    +D             + G+ ++  
Sbjct: 252 PVVASNVVYALGYNGNLTALDLRSGQITWKREIGSVNDF-----------IVDGDRIYLV 300

Query: 150 TLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPMIVNGKLITGVAGGEFGVV----GK 205
             D ++ ALN + G V+W +    H+       AP + NG L+ G A G    V    G+
Sbjct: 301 DQDDRITALNTNGGVVIWRQGDLLHRN----LTAPALYNGYLVVGDAEGYLHWVNTTDGR 356

Query: 206 IQAYNPENGELLWMRPTVEGHMGYVY-KDGK 235
                  +G  L  +P V      V  KDG+
Sbjct: 357 FVVQQKVDGSGLLSKPVVASDKLLVQAKDGE 387



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 50/251 (19%), Positives = 81/251 (32%), Gaps = 69/251 (27%)

Query: 292 GDNLYSSSR----LALNPDDGTIKWHFQSTPHDGWDFDGVNELISFNYKDGGKEVKAAAT 347
           G+++Y  S      ALN DDGT++W  +             E++S      G  +   + 
Sbjct: 120 GNHVYVGSERAQLFALNADDGTLQWQTKV----------AGEVLSSPVVSDGMVIIHTS- 168

Query: 348 ADRNGFFYVLDRTNGKFIRGFPFVDKITWATGLDKDGRPIYNDASRPGAPGSEAKGSSVF 407
              NG    L  ++G           I W   LD     +  +++   A G+   G    
Sbjct: 169 ---NGMLQALSESDG----------TIKWTVNLDMPSLSLRGESAPTAAFGAAIVGG--- 212

Query: 408 VAPAFLGAKNWMPMAYNKDTGLFYVPSNEWGMDIWNEGIAYKKGAAFLG----------- 456
                             D G         G  IW + I+   GA  +            
Sbjct: 213 ------------------DNGRVSAVMINQGQLIWQQRISQPGGATEIARLNDVDTTPVV 254

Query: 457 AGFTIKPLNEDYIGVLRAIDPVSGKEVWRHKNYAPLWGGV--LTTKGNLVFTGTPEGFLQ 514
           A   +  L   Y G L A+D  SG+  W+ +      G V      G+ ++    +  + 
Sbjct: 255 ASNVVYALG--YNGNLTALDLRSGQITWKRE-----IGSVNDFIVDGDRIYLVDQDDRIT 307

Query: 515 AFNAKTGDKVW 525
           A N   G  +W
Sbjct: 308 ALNTNGGVVIW 318