Pairwise Alignments

Query, 308 a.a., putative Periplasmic binding protein from Pseudomonas putida KT2440

Subject, 288 a.a., amino acid ABC transporter, periplasmic substrate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  137 bits (344), Expect = 4e-37
 Identities = 100/296 (33%), Positives = 151/296 (51%), Gaps = 19/296 (6%)

Query: 12  RRGVTAMRLWAVLLSGLLLWCAAAQAQVRNYDAIIAAGELKVAVYKDFAPYSFQDHGQPR 71
           RR V A  L AV+        A AQA + + + I A G LKVAVYKD AP+S        
Sbjct: 9   RRQVLAALLAAVVP------LAHAQADLSDLERIRANGALKVAVYKDNAPFSDGPANDLH 62

Query: 72  GVDVELAQALATALGVRLQLIWAPPGEKLDDDLRDYIWRGSPLRHQQLADLMMRVPYDRA 131
           G+DV +A ALA  L +RL L+    GE ++DDLR+ +WRG  L +   AD+M++VP DR 
Sbjct: 63  GLDVSIAAALARQLQLRLALLPFDAGENMNDDLRNMVWRGHYLGYGP-ADVMLQVPVDRY 121

Query: 132 YAQRRNELGELENAQVVMFGPYQQERWQVAYDRRRLASVASVAVFQQHPIGVEVDSVPSF 191
             Q+        N QV++  PY +++  +A+D RR+A V S    +  P+  E  +  + 
Sbjct: 122 LMQK--------NRQVMILAPYMRQQLVLAHDTRRIADVNSPEDLKGLPLAAEQGAGAAS 173

Query: 192 YLTSVFNGMLSARTHHYPGVQQAFAAMQAGQVDAVMAMRGEVDWQLHQAADPQ---LALA 248
            L     G+L A+   +   +QA  A+  G+  A    R + +  L    DP+   + L+
Sbjct: 174 ALMGHGGGLLRAQVGIHHSGEQAVQAVVEGKAAAAYVTRAQAESVLSH-TDPKPTHIRLS 232

Query: 249 ENAYPNLGKQAWEIGMAVHESNRQLAYAVEEAMEAMIRDGRLKAMYAAYGLRYEVP 304
             A   +    W +GMA+   N+ L  A+E AM++M   G L A++  +GL    P
Sbjct: 233 TLALGGVPGNGWPVGMAIKAENKDLGLALEGAMKSMRDSGELLAIFQKHGLTLTAP 288