Pairwise Alignments
Query, 329 a.a., putative Outer membrane protein from Pseudomonas putida KT2440
Subject, 340 a.a., conserved hypothetical protein containing WD40/YVTN repeat domain from Pseudomonas putida KT2440
Score = 99.8 bits (247), Expect = 9e-26
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 13/242 (5%)
Query: 55 TLPVGQRPRGLLLSHDSKLLYICASDSDRVQVMDVATRKIIKELPSGKDPEQFALHPNDR 114
+ P G P ++ ++ S ++RV++ D+ R + +P+G+ P L P+ R
Sbjct: 107 SFPAGDHPAHVITDVTGLRAFVTDSAANRVRIFDLEQRIELPGIPTGRYPHGLRLSPDGR 166
Query: 115 WLYVSNEDDALVTVIDTVTDKVLGQIEVGIEPEGMAVSPDGKWAVNTSETTNMLHWIDTS 174
LY++N V++ID VT K QI VG P + +PDG+ A + TN L IDT+
Sbjct: 167 TLYIANMKSDSVSLIDVVTLKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGIIDTA 226
Query: 175 TQTLADSTLVDQRPRFVEFSKDGSRLWASAEIGG-----TVTILDVTTRQVLKTLNFQIK 229
+ + V + P + + DG +++ + + G V+I+D+ TR L T+ K
Sbjct: 227 RRKVIGKVDVGRTPIQMMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGTVTTG-K 285
Query: 230 GVHPDKVQPVGIKLSADGKYAFVALGPANHVAVIDAKTFDVLDYLLVGRRVWQLAFTPDQ 289
G H G+ +S+DG Y FV+ A V+VID + V+ VG ++F P
Sbjct: 286 GAH-------GVAISSDGAYVFVSNIEAGTVSVIDTSSRKVVATHKVGAGPNGISFEPPS 338
Query: 290 SQ 291
+Q
Sbjct: 339 AQ 340
Score = 96.3 bits (238), Expect = 1e-24
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 5/197 (2%)
Query: 32 AWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASDSDRVQVMDVAT 91
A+V++ N + + DL+ +P G+ P GL LS D + LYI SD V ++DV T
Sbjct: 126 AFVTDSAANRVRIFDLEQRIELPGIPTGRYPHGLRLSPDGRTLYIANMKSDSVSLIDVVT 185
Query: 92 RKIIKELPSGKDPEQFALHPNDRWLYVSNEDDALVTVIDTVTDKVLGQIEVGIEPEGMAV 151
K ++P GK P Q P+ R +VS + +IDT KV+G+++VG P M
Sbjct: 186 LKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGIIDTARRKVIGKVDVGRTPIQMMA 245
Query: 152 SPDGK--WAVNTSETTN---MLHWIDTSTQTLADSTLVDQRPRFVEFSKDGSRLWASAEI 206
+ DG+ + N N + +D T++ + + V S DG+ ++ S
Sbjct: 246 TVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGTVTTGKGAHGVAISSDGAYVFVSNIE 305
Query: 207 GGTVTILDVTTRQVLKT 223
GTV+++D ++R+V+ T
Sbjct: 306 AGTVSVIDTSSRKVVAT 322
Score = 85.1 bits (209), Expect = 2e-21
Identities = 49/168 (29%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 31 TAWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASDSDRVQVMDVA 90
T +++N K +S+SLID+ TL+ T +PVG+ P + + D +L ++ S ++++ ++D A
Sbjct: 167 TLYIANMKSDSVSLIDVVTLKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGIIDTA 226
Query: 91 TRKIIKELPSGKDPEQFALHPNDRWLYVSNE-----DDALVTVIDTVTDKVLGQIEVGIE 145
RK+I ++ G+ P Q + R +YV+N+ D V+++D T LG + G
Sbjct: 227 RRKVIGKVDVGRTPIQMMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGTVTTGKG 286
Query: 146 PEGMAVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEF 193
G+A+S DG + ++ + IDTS++ + + V P + F
Sbjct: 287 AHGVAISSDGAYVFVSNIEAGTVSVIDTSSRKVVATHKVGAGPNGISF 334
Score = 79.0 bits (193), Expect = 2e-19
Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 28/315 (8%)
Query: 33 WVSNEKDNSLSLIDLQTLEV-TETLPVGQRPRGLLLSHDSKLLYIC---------ASDSD 82
+ +NE+ S+S ++L T +V T LP+ P L +S D LL + + +
Sbjct: 32 YTANERSASISQVNLATGDVSTVALPIA--PHNLQVSPDGSLLLVVGVAGHAGHSSGEKP 89
Query: 83 RVQVMDVATRKIIK---ELPSGKDPEQFALHPNDRWLYVSNEDDALVTVIDTVTDKVLGQ 139
Q++ +T + + P+G P +V++ V + D L
Sbjct: 90 GGQLLVFSTSALDRPPFSFPAGDHPAHVITDVTGLRAFVTDSAANRVRIFDLEQRIELPG 149
Query: 140 IEVGIEPEGMAVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEFSKDGSR 199
I G P G+ +SPDG+ + ++ + ID T V + P V F+ DG
Sbjct: 150 IPTGRYPHGLRLSPDGRTLYIANMKSDSVSLIDVVTLKETAQIPVGKGPVQVGFAPDGRL 209
Query: 200 LWASAEIGGTVTILDVTTRQVLKTLNFQIKGVHPDKVQPVGIKLSADGKYAFVA-----L 254
+ S + I+D R+V+ ++ P+ + + DG+ +VA
Sbjct: 210 AFVSLSATNQLGIIDTARRKVIGKVDVGRT--------PIQMMATVDGRQVYVANQGSGQ 261
Query: 255 GPANHVAVIDAKTFDVLDYLLVGRRVWQLAFTPDQSQLLATNGVSGDVSVIDAKQLKVLK 314
P + V+++D +T L + G+ +A + D + + +N +G VSVID KV+
Sbjct: 262 NPDDRVSIVDIQTRSSLGTVTTGKGAHGVAISSDGAYVFVSNIEAGTVSVIDTSSRKVVA 321
Query: 315 SVKVGRYPWGVVVTP 329
+ KVG P G+ P
Sbjct: 322 THKVGAGPNGISFEP 336
Score = 63.2 bits (152), Expect = 9e-15
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 116 LYVSNEDDALVTVIDTVTDKVLGQIEVGIEPEGMAVSPDGKWAVNTSETTNMLHWIDTST 175
+Y +NE A ++ ++ T V + + I P + VSPDG + + H
Sbjct: 31 VYTANERSASISQVNLATGDV-STVALPIAPHNLQVSPDGSLLLVVGVAGHAGHSSGEKP 89
Query: 176 --QTLADSTLVDQRPRFVEFSKD----------GSRLWASAEIGGTVTILDVTTRQVLKT 223
Q L ST RP F + D G R + + V I D+ R
Sbjct: 90 GGQLLVFSTSALDRPPFSFPAGDHPAHVITDVTGLRAFVTDSAANRVRIFDLEQR----- 144
Query: 224 LNFQIKGVHPDKVQPVGIKLSADGKYAFVALGPANHVAVIDAKTFDVLDYLLVGRRVWQL 283
++ G+ P P G++LS DG+ ++A ++ V++ID T + VG+ Q+
Sbjct: 145 --IELPGI-PTGRYPHGLRLSPDGRTLYIANMKSDSVSLIDVVTLKETAQIPVGKGPVQV 201
Query: 284 AFTPDQSQLLATNGVSGDVSVIDAKQLKVLKSVKVGRYPWGVVVT 328
F PD + + + +ID + KV+ V VGR P ++ T
Sbjct: 202 GFAPDGRLAFVSLSATNQLGIIDTARRKVIGKVDVGRTPIQMMAT 246
Score = 25.8 bits (55), Expect = 0.002
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 30 ATAWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGL 65
A +VSN + ++S+ID + +V T VG P G+
Sbjct: 297 AYVFVSNIEAGTVSVIDTSSRKVVATHKVGAGPNGI 332