Pairwise Alignments

Query, 329 a.a., putative Outer membrane protein from Pseudomonas putida KT2440

Subject, 353 a.a., Uncharacterized protein YncE from Escherichia coli ECRC98

 Score = 50.4 bits (119), Expect = 6e-11
 Identities = 71/330 (21%), Positives = 129/330 (39%), Gaps = 48/330 (14%)

Query: 14  SLLSGALALASSHTMAATAWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKL 73
           SLL G+L +ASS +                    Q  E      VG+    +  S     
Sbjct: 14  SLLLGSLLVASSFST-------------------QAAEEMLRKAVGKGAYEMAYSQQENA 54

Query: 74  LYICASDSDR------VQVMDVATRKIIKELPSGKDPEQFALHPNDRWLYVSNEDDALVT 127
           L++  S S +      V  +D  T ++ + + +   P    ++   + L+  N  ++ VT
Sbjct: 55  LWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVT 114

Query: 128 VIDTVTDKVLGQIEVGIEPEGMAVSPDGKWAVNTSETTNMLH----------WIDTSTQT 177
            ID  T +V G++ +        V P     +   + TN ++          W+    + 
Sbjct: 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKDSVIWV-VDGEN 173

Query: 178 LADSTLVDQRPRF---VEFSKDGSRLWASAEIGGTVTILDVTTRQVLKTLNFQIKGVHPD 234
           +   T +    +    +     G RL+ +   G  +TI D    ++L       K +  D
Sbjct: 174 IKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITI-DTADNKILSR-----KKLLDD 227

Query: 235 KVQPVGIKLSADG--KYAFVALGPANHVAVIDAKTFDVLDYLLVGRRVWQLAFTPDQSQL 292
             +   I +S D   + AF+    A  V V+D +  ++L  +     +  L F P +++ 
Sbjct: 228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVL-FNPARNEA 286

Query: 293 LATNGVSGDVSVIDAKQLKVLKSVKVGRYP 322
             T+  +G VSVIDAK  KV+K+     +P
Sbjct: 287 YVTHRQAGKVSVIDAKSYKVVKTFDTPTHP 316



 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 29/250 (11%)

Query: 23  ASSHTMAATAWVSNEKDNSLSLIDLQTLEVTETLPVGQR----------PRGLLLSHDSK 72
           A+ +    T W  N  +++++ ID +T EV   L +  R          PR L+    + 
Sbjct: 94  ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN 153

Query: 73  LLYICASDSDRV-QVMDVATRKIIKELPS-GKDPEQFALHPNDRWLYVSNEDDALVTVID 130
            +YI     D V  V+D    K+   + + GK     AL    + LY +N D  L+T ID
Sbjct: 154 TVYISGIGKDSVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELIT-ID 212

Query: 131 TVTDKVLGQ---IEVGIEPEGMAVSPDG---KWAVNTSETTNMLHWIDTSTQTLADSTLV 184
           T  +K+L +   ++ G E   + +S D    +  +  S+   +L  +DT    +      
Sbjct: 213 TADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV-VDTRNGNILAKVAA 271

Query: 185 DQRPRFVEFSKDGSRLWASAEIGGTVTILDVTTRQVLKTLNFQIKGVHPDKVQPVGIKLS 244
            +    V F+   +  + +    G V+++D  + +V+KT +      HP+      + LS
Sbjct: 272 PESLA-VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNS-----LALS 322

Query: 245 ADGKYAFVAL 254
           ADGK  +V++
Sbjct: 323 ADGKTLYVSV 332



 Score = 33.5 bits (75), Expect = 8e-06
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 32  AWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASDSDRVQ 85
           A+V++ +   +S+ID ++ +V +T      P  L LS D K LY+        Q
Sbjct: 286 AYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQ 339