Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 28/142 (19%)

Query: 508 YNRMFALFGENNPENLHLLPDPLLRPLA-----------HLMIDEFQDVSPQIVSWLRAC 556
           Y R    F   + ++L LLP  L    A           +L++DE+QD +      ++  
Sbjct: 171 YQRTLKAFNAVDFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKML 230

Query: 557 LAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFPSPANTRVML 616
           + +                +    VGDD QSIY WRG+ P+  M     +PS     VML
Sbjct: 231 IGK---------------RNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPS--LKVVML 273

Query: 617 VDNYRCQQQVIDAAEHLVKGTP 638
             NYR   +++  A  L+   P
Sbjct: 274 EQNYRSTSRILRCANVLISNNP 295



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQ 204
           V+AGAG+GK++ +  +I  L    G     +  +TFT ++ ++  +R+  +       L+
Sbjct: 21  VLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAAREMKERVGTL-------LK 73

Query: 205 PVQAREL-VRTFHSRILPLVR 224
             + R L V TFH+  L ++R
Sbjct: 74  GGEGRGLTVCTFHNLGLNIIR 94



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 17/71 (23%)

Query: 717 LRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQR 776
           ++ +T H++KGL+   VF++G  + +   P+++ +               DT ++E  +R
Sbjct: 553 VQMMTLHASKGLEFPYVFIMGMEEEIL--PHRSSIEA-------------DTIEEE--RR 595

Query: 777 LAYVAVTRAVQ 787
           LAYV +TRA Q
Sbjct: 596 LAYVGITRARQ 606