Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 536 HLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSS 595
           ++M+DE+QD +     WLR  LA+ R+              ++ CVGDD QSIY WRG+ 
Sbjct: 226 YIMVDEYQDTNSSQYLWLRL-LAQTRK--------------NICCVGDDDQSIYSWRGAE 270

Query: 596 PKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLV 634
               + F K FP     R  L  NYR    ++ AA  ++
Sbjct: 271 VANILRFEKDFPGAVIVR--LEQNYRSTPHILGAASGVI 307



 Score = 46.6 bits (109), Expect = 5e-09
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 24/159 (15%)

Query: 639 AIAGKKARASGPAAELPGSPVKVFDRDEAALGETL-----VEHYQRGETVMMLYRKGSDR 693
           A  G  AR    AA+LP + +     DE+    TL      E   R E +  L R   + 
Sbjct: 470 AFIGDLARWRDRAAQLPHAELARQILDESGYTATLQAERSTESAGRLENLSELTRAMEEY 529

Query: 694 ALMN---EHLQSVLHAEAALPAEQRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQ 750
             +    EH+  V+  EA    ++++L  +T H+AKGL+ D VF+ G  + +  S     
Sbjct: 530 ETLGAFLEHVSLVMDNEAQ--QDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPS----- 582

Query: 751 VYRQAGLGKAGDAQPFDTAQKEEVQRLAYVAVTRAVQHC 789
              Q  L + G          EE +RLAYVA+TRA + C
Sbjct: 583 ---QRALDEGG------LNSLEEERRLAYVAITRARKRC 612



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQ 204
           V+AGAG GK+ +L  R+  L          +  VTFT ++ ++  +R+ ++         
Sbjct: 34  VLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAAREMRERVGRMIG------P 87

Query: 205 PVQARELVRTFHSRILPLVR 224
            V+    + TFH+    ++R
Sbjct: 88  AVEGMPWLGTFHAIAAKMLR 107