Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 21/173 (12%)

Query: 532 RPLAHLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGW 591
           R   H+++DEFQD +    +WLR     + R G            SL+ VGDD QSIYGW
Sbjct: 215 RRFRHVLVDEFQDTNAVQYAWLRL----LARGG-----------DSLMAVGDDDQSIYGW 259

Query: 592 RGSSPKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPA 651
           RG+  +   ++T  FP     R  L  NYR    ++ AA  L+       GK+       
Sbjct: 260 RGAKIENIHQYTADFPDAEMIR--LEQNYRSTGGILKAANALIANNSGRLGKELWTDMGE 317

Query: 652 AELPGSPVKVFDRDEAALG----ETLVEHYQRGETVMMLYRKGSDRALMNEHL 700
            E         + DEA       E+LV+       + +LYR  +   ++ E L
Sbjct: 318 GEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEEAL 370



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 47/178 (26%)

Query: 639 AIAGKKARASGPAAEL-PGSPVKVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMN 697
           A+ G+ A A G   EL  G   KV D     + +T +E  Q G        KG       
Sbjct: 452 ALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIE--QSGLITYHQEEKGEKGQARV 509

Query: 698 EHLQSVLHA---------------------EAALPA-------EQRRLRQLTYHSAKGLQ 729
           E+L+ ++ A                      A+L A        +  ++ +T HSAKGL+
Sbjct: 510 ENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAKGLE 569

Query: 730 ADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQRLAYVAVTRAVQ 787
              VF++G  + L   P+K  +     L              EE +RLAYV +TRA++
Sbjct: 570 FPYVFLVGMEEGL--FPHKMSLEEPGRL--------------EEERRLAYVGITRAMR 611



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 131 AQWKLIFSDTPSTCVVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIK 190
           AQ + + +      V+AGAG+GK+  LV RI  L         ++  VTFT ++  +  +
Sbjct: 16  AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75

Query: 191 RLLQVFALWQINLQPVQARELVRTFHSRILPLVRS 225
           R+ Q+     + + P  A   V TFH     L+R+
Sbjct: 76  RIEQL-----LGINP--AGMWVGTFHGLAHRLLRA 103