Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 720 a.a., DNA helicase II from Dickeya dianthicola ME23

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 29/173 (16%)

Query: 536 HLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSS 595
           ++++DEFQD +    +W+R    +                + ++ VGDD QSIYGWRG+ 
Sbjct: 216 NILVDEFQDTNRIQYAWIRLLAGD---------------GAKVMIVGDDDQSIYGWRGAQ 260

Query: 596 PKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELP 655
            +    F + F     T + L  NYR    +++AA  L+       GK     G    + 
Sbjct: 261 VENIQHFLRDFSDV--TTIRLEQNYRSTANILNAANALIAHNGDRLGKNLWTDG----ID 314

Query: 656 GSPVKVF----DRDEAALGETLVEHYQRGETVM----MLYRKGSDRALMNEHL 700
           G P+ ++    + DEA    + ++ +Q     +    +LYR  +   ++ E L
Sbjct: 315 GEPISLYCAFNELDEARFVVSRIKVWQEAGGALSECAILYRSNAQSRVLEEAL 367



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 25/134 (18%)

Query: 661 VFDRDEAALGETLVEHYQRGETVMMLYR-KGSDRALMNEHLQSVL-HA-----EAALPAE 713
           ++++++   G+  VE+ +   T    +  +  D+ L+   LQ+ L HA     E    A 
Sbjct: 493 MYEQEKGEKGQARVENLEELVTATRQFSYQDEDQDLLP--LQAFLSHAALEAGEGQADAY 550

Query: 714 QRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEE 773
           Q  ++ +T HSAKGL+   VF++G    +    + +Q+    G             + EE
Sbjct: 551 QDAVQLMTLHSAKGLEFPQVFVVG----MEEGMFPSQMSLDEG------------GRLEE 594

Query: 774 VQRLAYVAVTRAVQ 787
            +RLAYV VTRA+Q
Sbjct: 595 ERRLAYVGVTRAMQ 608



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQ 204
           V+AGAG+GK+  LV RI  L         ++  VTFT ++  +   R+ Q+    Q  + 
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRIDQLLGTGQGGM- 85

Query: 205 PVQARELVRTFHSRILPLVRS 225
                  + TFH     L+R+
Sbjct: 86  ------WIGTFHGLAHRLLRA 100