Pairwise Alignments

Query, 391 a.a., putative inner membrane transport protein from Pseudomonas putida KT2440

Subject, 388 a.a., arabinose transporter permease from Pseudomonas simiae WCS417

 Score =  345 bits (886), Expect = e-99
 Identities = 186/373 (49%), Positives = 245/373 (65%), Gaps = 8/373 (2%)

Query: 7   LVALAIGAFGIGVTEFAPMGMLPSIATDLGVSIPAAGLLVSAYAIGVLIGAPLMTLATVK 66
           L+ LA+ AF IG TEF  MG+LP +A DLGVSIP AG LV+ YA+GV IGAP M LAT K
Sbjct: 5   LLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATAK 64

Query: 67  IPRRYLLIGLMAIFTLGNLMSALASDYASLLVARVVTSLNHGAFFGIGSIVAASVVPPEK 126
           +PR+  L+ LM IF +GNL+ ALASDY  L+ ARVVT+L HGAFFGIGS+VAA++VP  K
Sbjct: 65  LPRKAALVALMGIFIIGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAANLVPANK 124

Query: 127 RAGAVAAMFMGLTLATIGGVPLATWLGEMLGWRTAFWGIAGLGLVAMTTLWYALPNVASP 186
           RA AVA MF GLTLA + GVPL T LG+  GWR+ FW +  +G+VA+  L   LP     
Sbjct: 125 RASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPAKRDE 184

Query: 187 KGEGAMAEIRVLGRRPVLAALLLTVVGSSAMFTVFTYIAPILQHEAAASTPFVTAMLVLF 246
           +     AE+  L    +  +L +T + +++MFT+FTY+AP+L      S   VT  L+L 
Sbjct: 185 EKLDMRAELAALKGAGIWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLI 244

Query: 247 GVGLTLGNVWGGKAADRSIDRTLILSLAGLIAVLLVFPLVLDWP----LPTALAILVWGA 302
           G+GLT+GN+ GGK AD+ +  TLI    G+   + V    L W     +PT + + +W  
Sbjct: 245 GLGLTVGNIIGGKLADKRLAATLI----GVFISMAVVSTALTWTSVAVIPTEITLFLWAT 300

Query: 303 ASFALVPPLQMRVMEAAKDAPNLASAVNIGAFNLGNAIGAALGGAVINAGLGYPAISLAG 362
           ASFA VP LQ+ V+   K APNL S +NIGAFN+GNA+GA +GG+VI  G G   + LA 
Sbjct: 301 ASFAAVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTRVPLAA 360

Query: 363 AAMAALGLVLVLL 375
           A +A L L++ L+
Sbjct: 361 AVLAILALLVTLI 373