Pairwise Alignments

Query, 469 a.a., putative phage integrase from Pseudomonas putida KT2440

Subject, 418 a.a., integrase from Pseudomonas simiae WCS417

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 104/472 (22%), Positives = 188/472 (39%), Gaps = 83/472 (17%)

Query: 3   KVTIKQLEALTAQDDGKVFREDGGLVAEVRVGVRGITVQFSYEFKLDGARTRKRLGSWPK 62
           +++ +QL+ +       V  +  GL   VR     +   F+Y   +   R    LG++P+
Sbjct: 7   RLSDRQLKGVKPASKDYVLTDGDGLQLRVRSN-GSLLWNFNYREPVTKNRINMGLGTYPE 65

Query: 63  KSLAQIRSERDEARVLVTKGLHPTLAAKAARIEAQAAIATTIAEAEREAAENKTVSDLFD 122
            SLA  R    +AR L+ +G+ P +               T+ EA+R   E+ T  ++  
Sbjct: 66  LSLANARKMAVQARELLAQGIDPKVQRD------------TLNEAKRAETEH-TFENVAT 112

Query: 123 EWI---RDGVSRQDGNAELIRSFKKDVLPLIGKKPLRNLTEKDLLAVLRSVKSRGLNRTV 179
            W    +D V+      ++ RS    V P +   PL  +T   ++ +LR ++++G   TV
Sbjct: 113 AWFDLKKDSVTPAYAE-DIWRSLTLHVFPDLKTTPLAKITAPMVIELLRPIEAKGSLETV 171

Query: 180 VIRSKDIGQMLRWAEKRKPWRGLMTDGNPADLIDVNKL-----LDHDYEEQRDRLLSPDE 234
              S+ + +             +MT G  + LI  N L     +    +++    L P+E
Sbjct: 172 KRLSQRLNE-------------IMTYGVNSGLIFANPLSGIRAVFKKPKKENMAALPPEE 218

Query: 235 IRELRDVLERLENDYDELPAGQKYSGIRPVNTRVQCALWICLSTLCRIGELLKAEWRYVD 294
           + EL   L                     +    +C +   L T+ R  E     W  +D
Sbjct: 219 LPELMLELANAS-----------------IKRTTRCLIEWQLHTMTRPAEAATTRWSDID 261

Query: 295 LEKGTWFIPAEATKGHKGKRQDHHVFLSAFSIAQFKRLQEETGDTPFCFPS-KDGRSHVD 353
            EK  W IP E  K    KR+ H + LS  ++A    L+  +G   + FP+ ++ R+H +
Sbjct: 262 FEKRIWTIPPERMK----KRRPHSIPLSDQAMALLDILKSHSGHREYVFPADRNPRTHAN 317

Query: 354 TKTVSKLIGDRQCRFKNRSKPLAGRHHDDSLVLSKGTKGEWTPHDLRRTGATMMQELGVT 413
           ++T +  +  ++  F++R                         H +R   +T++ E G  
Sbjct: 318 SQTANMAL--KRMGFQDR----------------------LVSHGMRSIASTILNEHGWD 353

Query: 414 LEIIDRCQNHLLGGSKVRRHYLHHDYAKEKTEAWRLLGEKLESILAGSPVAA 465
            E+I+    H +   +VR  Y   DY + +        E ++    GS  AA
Sbjct: 354 PELIEVALAH-VDKDEVRSAYNRADYIERRRTMMAWWSEHIQKAATGSLSAA 404