Pairwise Alignments

Query, 469 a.a., putative phage integrase from Pseudomonas putida KT2440

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 92/402 (22%), Positives = 168/402 (41%), Gaps = 67/402 (16%)

Query: 44  YEFKLDGARTRKRLGSWPKKSLAQIRSERDEARVLVTKGLHPTLAAKAARIEAQAAIATT 103
           + F   G + R  +G++P+  L + R+ RDEAR  +  G+ P    + +R E +A +   
Sbjct: 40  FRFTWLGKQVRISIGTYPETGLKEARARRDEAREDIANGVDP----RDSRREKKAGMI-- 93

Query: 104 IAEAEREAAENKTVSDLFDEWI--RDGVSRQDGNAELIRSFKKDVLPLIGKKPLRNLTEK 161
                  AA  +T   ++DEW+  R G         +  +   DVLP +G + +  +   
Sbjct: 94  -------AAGGQTFRRVYDEWLAFRKGSISPGTYRVISNAMALDVLPTLGDRQIDAIKRA 146

Query: 162 DLLAVLRSVKSRGLNRTVVIRSKDIGQMLRWAEKRKPWRGLMTDGNPADLIDVNKLLDHD 221
           D++A++R V+ RG   T V   + + Q+  +A         + + NP    +++ + +  
Sbjct: 147 DVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIATG-----VIEANPT--AEMHAVTEKM 199

Query: 222 YEEQRDRLLSPDEIRELRDVLERLENDYDELPAGQKYSGIRPVNTRVQCALWICLSTLCR 281
            + +    L   E+  +   +        +  +GQ+          ++ AL + + T  R
Sbjct: 200 GQHKPHPFLPFSEMPRIMAAIR-------DCASGQQ----------LKAALMLMIYTASR 242

Query: 282 IGELLKAEWRYVDLEKGTWFIPAEATKGHKGKRQDHHVFLSAFSIAQFKRLQEETGDTPF 341
            GE+  AEW  +DL+   W  PA   K     R+DH V LS  +IA  + +   TGD  +
Sbjct: 243 PGEVRHAEWSEIDLDAAIWTTPAAKMK----MRRDHAVPLSTQAIAILESMLPITGDKRY 298

Query: 342 CFPSKDGRSHVDTKTVSKLIGDRQCRFKNRSKPLAGRHHDDSLVLSKGTKGEWTPHDLRR 401
            F +                       +N +    G ++ ++++ S G  G  +PH  R 
Sbjct: 299 VFIN-----------------------RNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRH 335

Query: 402 TGATMMQELGVTLEIIDRCQNHLLGGSKVRRHYLHHDYAKEK 443
             +T M   G   + I+R   H    S +R  Y H  Y  ++
Sbjct: 336 LFSTEMNGRGYNRDWIERQLAH-ADSSFIRDVYNHATYLDQR 376