Pairwise Alignments

Query, 469 a.a., putative phage integrase from Pseudomonas putida KT2440

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score = 67.4 bits (163), Expect = 9e-16
 Identities = 89/372 (23%), Positives = 149/372 (40%), Gaps = 47/372 (12%)

Query: 21  FREDGGLVAEVRVGVRGITVQFSYEF---KLDGARTRKRLGSWPKKSLAQIRSERDEARV 77
           +RE  G     RV   G   Q S+E    K DG  +   LG +P+ S +  R +  + R 
Sbjct: 26  YREQDGNGLYFRVKPNG---QKSWELRYKKPDGKWSWLGLGGYPEISGSLARQKAAQLRE 82

Query: 78  LVTKGLHPTLAAKAARIEAQAAIATTIAEAEREAAENKTVSDLFDEWIRDGVSRQDGNAE 137
             + G +P ++ +A ++  Q A   T     RE  E +  S     W   G SR+     
Sbjct: 83  DASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTS-----W-ESGTSRR----- 131

Query: 138 LIRSFKKDVLPLIGKKPLRNLTEKDLLAVLRSVKSRGLNRTVVIRSKDIGQMLRWAEKRK 197
           ++ + +  V P+ GK+    +   + +  LR ++ +G+        + +G++  + ++  
Sbjct: 132 VLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGI-------IEQMGRVRAFCKEIY 184

Query: 198 PWRGLMTDGNPADLIDVNKLLDHDYEEQRDRLLSPDEIRELRDVLERLENDYDELPAGQK 257
                       DL  V     H+  E   + L          V        +ELPA  +
Sbjct: 185 ------------DLARVTGRAVHNPLEGLSKFLQSRSAENYAHV------SIEELPALLR 226

Query: 258 YSGIRPVNTRVQCALWICLSTLCRIGELLKAEWRYVDLEKGTWFIPAEATKGHKGKRQDH 317
                P    V+  L +      R  E+ +A W  +DL K  W IPAE  K    +R++H
Sbjct: 227 AINSYPHAKDVRIGLRLLSLLASRPSEIREARWSEIDLTKKLWTIPAERMK----RRREH 282

Query: 318 HVFLSAFSIAQFKRLQEETGDTPFCFPSKDGRSHVDTKTVSKLIGDRQCRFKNRSKPLAG 377
            V LS  SI     L+  TG  P  FP +  R+   + TV  L+  R+  +  R      
Sbjct: 283 VVPLSRQSIEALTELRTLTGAYPLLFPGRKDRTIPRSNTVF-LMALRRLGYAGRQTGHGF 341

Query: 378 RHHDDSLVLSKG 389
           RH   +++  +G
Sbjct: 342 RHIASTILNEQG 353