Pairwise Alignments

Query, 469 a.a., putative phage integrase from Pseudomonas putida KT2440

Subject, 402 a.a., Putative prophage CPS-53 integrase from Alteromonas macleodii MIT1002

 Score = 88.2 bits (217), Expect = 5e-22
 Identities = 104/460 (22%), Positives = 191/460 (41%), Gaps = 60/460 (13%)

Query: 1   MSKVTIKQLEALTAQDDGKVFREDGGLVAEVRVGVRGITVQFSYEFKLDGARTRKRLGSW 60
           M  +T+KQ+  L     GK  +   G      V  RG    +S  + ++G R  K LG  
Sbjct: 1   MPNLTVKQVNILAK---GKPSKTSDGNGLSFVVPNRG-EPYWSLRYSVNGKRREKSLGKA 56

Query: 61  PKKSLAQIRSERDEARVLVTKGLHPTLAAKAARIEAQAAIATTIAEAEREAAENKTVSDL 120
            + +LA+ R   +E R  + +GL P                  +++        +++ +L
Sbjct: 57  RQVTLAEARGLAEEERTKLREGLDP------------------LSKFAGSVLNIRSMDEL 98

Query: 121 FDEWIRDGVSRQDGNAELIRSFKKDVLPLIGKKPLRNLTEKDLLAVLRSVKSRGLNRTVV 180
           F+++ ++ + R        R ++ D+ P IG   + N+T   +  ++RS+      R  V
Sbjct: 99  FNDYYQNKLLRLVHPNIPKRKYQNDISPYIGNMDVSNITPIHVRNIIRSIAES--ERPSV 156

Query: 181 IRSKDIGQMLRWAEKRKPWRGLMTDGNPADLIDVNKLLDHDYEEQRDRLLSPDEIRELRD 240
             S D+  +L    K     GL T  NPA +           E+ R R L+ +EI+ + +
Sbjct: 157 --SNDVLDLLNNLFKHATQLGL-TLNNPASVFSYMDA--GGQEKPRTRYLTLEEIKPIYE 211

Query: 241 VLERLENDYDELPAGQKYSGIRPVNTRVQCALWICLSTLCRIGELLKAEWRYVDLEKGTW 300
           +  +    +               +  + C L + L    R  ELL+A W   DL    W
Sbjct: 212 IFRQHPESFTR-------------DNYLACCLLLVLGV--RKNELLQAPWAEFDLTNAVW 256

Query: 301 FIPAEATKGHKGKRQDHHVFLSAFSIAQFKRLQEETGDTPFCFPSK--DGRSHVDTKTVS 358
            +P   TK    K +   + L   ++   + L+     + + FP++    + ++ + T++
Sbjct: 257 HLPKNRTKK---KYKGIDIPLPPIALEWLQELKVRGAGSDYVFPARRRSKKPYMGSDTLN 313

Query: 359 KLIGDRQCRFKNRSKPLAGRHHDDSLVLSKGTKGEWTPHDLRRTGATMMQELGVTLEIID 418
           + I       + +  P   R  D            +T HDLRRT  +++ +LG + E+ +
Sbjct: 314 RAIDGLFGIAQGKKIPPPNRMDDIE---------HFTVHDLRRTFRSLVPKLGFSSELGE 364

Query: 419 RCQNHLLGGSKVRRHYLHHDYAKEKTEAWRLLGEKLESIL 458
           RC NH +  S++   Y  +DY KE+ E    + E L+  L
Sbjct: 365 RCLNHKI--SRLDDTYNKYDYFKERLELHSKMCEFLQGHL 402