Pairwise Alignments

Query, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

Subject, 346 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

 Score =  174 bits (442), Expect = 2e-48
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 13/336 (3%)

Query: 2   ATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTAT 61
           AT++DVA LAG+S  TVS  L++   V E+   +V  AI  L+YVP   AR+L +  T T
Sbjct: 7   ATLQDVAQLAGVSTATVSRALSRPDLVQEETLARVSDAISRLNYVPGGAARALASGKTLT 66

Query: 62  IGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVV 121
           IG +VP   +  FA   + ++     NGY +++   D  P ++ + +R +L + +D L+V
Sbjct: 67  IGAVVPTLDHAIFARAIQAMQTELAGNGYQLLVAAHDYAPAQEAAAVRAMLARGVDALMV 126

Query: 122 ASVGQDDDLLQSLASVRTPMVIVDRELEGVDADL--VRIDHEQGAYLATRHLLELGHRDV 179
                 ++    L +   P+V+        DA L  +  D+E+  +L   HLL+LGHR  
Sbjct: 127 VGADHLEETWALLTTASVPVVL----SWSFDARLPAIGFDNEKAGWLIADHLLDLGHRRF 182

Query: 180 AYIGGPAETG-VTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVL-EGKRP 237
             I G        + R++G R A+A  G  +P S V+   FT  GG A  A+++     P
Sbjct: 183 GMISGFTHANDRARSRVAGVRAALAARGLELPSSCVVEAPFTLAGGRAGLAELMARATPP 242

Query: 238 SAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGES 297
           +A+  GND++  G L  A    I+VPG LSV+G D++E++ ++ P LTTV     ELG +
Sbjct: 243 TAVVCGNDLLAAGALFEAQASGIAVPGALSVVGIDNLEIAAHLAPPLTTVHLPTTELGRT 302

Query: 298 AASLLLTRIATPRQGAAEQRIVAP--RIVLRESTGP 331
            A  LL R+   R  A   R+  P   ++ R +T P
Sbjct: 303 VARHLLARL---RGEAQPHRVELPIELVIRRSATAP 335