Pairwise Alignments

Query, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

Subject, 345 a.a., DNA-binding transcriptional regulator CytR from Erwinia tracheiphila SCR3

 Score =  181 bits (459), Expect = 2e-50
 Identities = 109/331 (32%), Positives = 175/331 (52%), Gaps = 2/331 (0%)

Query: 2   ATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTAT 61
           AT++DVA  AG+S  TVS  L     VS   R KVE A+I + Y P+ + R+ +   + T
Sbjct: 10  ATMRDVAKKAGVSTATVSRTLMNPDKVSAATRQKVEEAVIAVGYSPNGITRNARRTESRT 69

Query: 62  IGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVV 121
           I ++VPN  +P+F+E+ RGIE      GY V++ +       ++S+L +++ +++DG+++
Sbjct: 70  ILVIVPNICDPFFSEIIRGIEVVAADRGYLVLIGDCAHQTCHEQSFLNLIMTRQVDGMIM 129

Query: 122 ASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVAY 181
                  +          PMV+ +     ++   V ID+   A+ A  HLL+LGH  +A 
Sbjct: 130 LGSQLPFESTPEERQNLPPMVMANEFAPELELPSVHIDNLTAAFEAVNHLLKLGHSRIAC 189

Query: 182 IGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLE-GKRPSAI 240
           I GP +  + Q RL G+ +A+   G       +   DFT   G  A  Q++     P A+
Sbjct: 190 IAGPHDMPLCQYRLQGYIQALQRHGIVAEPRYIARVDFTFDAGATAMKQLMALPAPPDAL 249

Query: 241 FAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESAAS 300
           F  +D++  G +  A    + +P +LS+IGFDDIELSRY  P LTTV Q    +G  A S
Sbjct: 250 FCHSDILALGAMAQAKNMGLRIPQDLSLIGFDDIELSRYSDPPLTTVIQPRFNIGREAMS 309

Query: 301 LLLTRIATPRQGAAEQRIVAPRIVLRESTGP 331
           LLL ++   +  +   R++   + +R ST P
Sbjct: 310 LLLEQL-QGKMVSNGSRLLDFELKIRGSTAP 339