Pairwise Alignments

Query, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

 Score =  539 bits (1388), Expect = e-158
 Identities = 281/330 (85%), Positives = 304/330 (92%), Gaps = 6/330 (1%)

Query: 1   MKTTPLNNQDAAPVRRSGTYFGLGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQI 60
           MKTT       +P +  G ++GLGTYLGLAGALLAMI LFS LS HF SY TFSTLANQI
Sbjct: 1   MKTT------TSPGKTGGNFYGLGTYLGLAGALLAMIALFSVLSDHFLSYDTFSTLANQI 54

Query: 61  PDLMVLAVGMTFVLIIGGIDLSVGSVLALAASTVSVAILGWGWGVLPSALLGMAVAALAG 120
           PDLMVLAVGMTF+LIIGGIDLSVGSVLALAAS VSVAILGWGW VLP+A+LGM  AALAG
Sbjct: 55  PDLMVLAVGMTFILIIGGIDLSVGSVLALAASAVSVAILGWGWSVLPAAVLGMGCAALAG 114

Query: 121 SITGGVTVAWRIPSFIVSLGVLEMARGLAYQFTDSRTAYIGDAYAWFSNPVAFGVSPAFI 180
           +ITG +TVAWRIPSFIVSLGVLEMARG+AYQ T SRTAYIGD++AW SNP+AFG+SP+FI
Sbjct: 115 TITGSITVAWRIPSFIVSLGVLEMARGVAYQMTGSRTAYIGDSFAWLSNPIAFGISPSFI 174

Query: 181 IALLVIVLAQLVLTRTVFGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALF 240
           IALLVI+ AQLVLTRTVFGRYLIGIGTNEEAVRLAGI+P+PYK+LVF+LMGLLAG+AALF
Sbjct: 175 IALLVIIAAQLVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALF 234

Query: 241 QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA 300
           QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA
Sbjct: 235 QISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGA 294

Query: 301 SEPTKRIITGAVIVIAVVLDTYRSRRAGRR 330
           +EPTKRIITGAVIVIAVVLDTYRS+RA RR
Sbjct: 295 TEPTKRIITGAVIVIAVVLDTYRSQRASRR 324