Pairwise Alignments

Query, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 344 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  152 bits (384), Expect = 1e-41
 Identities = 109/325 (33%), Positives = 163/325 (50%), Gaps = 34/325 (10%)

Query: 22  GLGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQIPDLM------VLAVGMTFVLI 75
           GLG  +GL    +A  +L           G F+TL N +  L       ++AVGM FV+I
Sbjct: 34  GLGPVIGLVLLCIAGTLL----------NGDFATLDNAMNVLTRTAFIGIIAVGMCFVII 83

Query: 76  IGGIDLSVGSVLALAASTVSVAILGWGWGVLPSALLGMAVAALAGSITGGV--------T 127
            GGIDLSVGS+ AL A +V +  + W      S LL + + A+   + G V         
Sbjct: 84  SGGIDLSVGSMAALIAGSV-IMFINWAGPASGSPLLAVVMGAVLAIVLGAVFGLAHGLLI 142

Query: 128 VAWRIPSFIVSLGVLEMARGLAYQFTDSRTAYIGDAYAWFSNPVAF----GVSPAFIIAL 183
              RI  FIV+LG L + R     F D     + +  +    PV +    G+     + +
Sbjct: 143 TKGRIEPFIVTLGTLGIFRAYLTYFADGGALTLDNDLSDLYAPVYYASLAGIPVPVWVFV 202

Query: 184 LVIVLAQLVLTRTVFGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQIS 243
           +V ++  ++L RT +GRY+  IG+NE+  R A +D    K+L + L+G+  G+A L  + 
Sbjct: 203 IVAIIGGVILNRTAYGRYVQAIGSNEQVARYAAVDVDRVKILTYVLLGVCVGIATLLYVP 262

Query: 244 RLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLA--AGLAQIGAS 301
           RL +A P  G   EL+ IAAV++GGT+L GG GS+  T  G +++SV++    L  I  S
Sbjct: 263 RLGSASPTTGLLWELEAIAAVIVGGTALKGGAGSITGTVVGAILLSVISNILNLTSI-IS 321

Query: 302 EPTKRIITGAVIVIAVVLDTYRSRR 326
                 + G VI+I   L   R RR
Sbjct: 322 VYLNAAVQGFVIIIVAFLQ--RGRR 344