Pairwise Alignments

Query, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 326 a.a., ABC transporter, membrane spanning protein (ribose) from Agrobacterium fabrum C58

 Score =  194 bits (493), Expect = 3e-54
 Identities = 124/310 (40%), Positives = 179/310 (57%), Gaps = 15/310 (4%)

Query: 28  GLAGALLAMIVLFSFL---SSHFWSYGTFSTLANQIPDLMVLAVGMTFVLIIGGIDLSVG 84
           G  G LL +++L  FL   S +F S      + +QI  L ++AVGMTFV+++GGIDLSVG
Sbjct: 22  GATGPLLGLLMLCVFLTFASENFLSLRNGLNILDQITVLGIMAVGMTFVILLGGIDLSVG 81

Query: 85  SVLALAASTVSVAILGW-----GWGVLPSALLGMAVAALAGSITGGVTVAWRIPSFIVSL 139
           SVLAL     S+ I+GW     G  +  + +L +  +A  G + G +  A+R+P+FI +L
Sbjct: 82  SVLAL-----SMMIMGWTANVAGMPMGMAIVLALVASAACGLVVGILVTAFRVPAFIATL 136

Query: 140 GVLEMARGLAYQFTDSRTAY-IGDAYAWFSNPVAFGVSPAFIIALLVIVLAQLVLTR-TV 197
            ++ +ARGLA   TD +      D +   +    FGV  A ++ +LV+VL      R   
Sbjct: 137 AMMSVARGLANMITDGQQIVGFPDWFMMLAIERHFGVLTATVLLMLVVVLVSWAFLRFRS 196

Query: 198 FGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQISRLEAADPNAGSGLE 257
            GR +  +G N E  RLAGI+     + V+ +  +LAGLA +   +RL++  P++G G E
Sbjct: 197 EGRTVYAVGGNPEVARLAGINVPLVTICVYVVCAVLAGLAGIVLAARLDSVQPSSGFGYE 256

Query: 258 LQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGASEPTKRIITGAVIVIAV 317
           L  IAAVVIGGTSL GG G +  T  GVLII VL  GL  +  S   +++I G VIV+AV
Sbjct: 257 LDTIAAVVIGGTSLSGGAGGIGGTLIGVLIIGVLRNGLNLLNVSPFLQQVIIGVVIVLAV 316

Query: 318 VLDTYRSRRA 327
             +T R RR+
Sbjct: 317 GAETLRRRRS 326