Pairwise Alignments

Query, 524 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

Subject, 499 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  366 bits (940), Expect = e-106
 Identities = 215/492 (43%), Positives = 307/492 (62%), Gaps = 8/492 (1%)

Query: 17  LAASGLGKTY-AQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPTTGHMTYR 75
           L  +G+GK +     L ++S   R  EV AL GENGAGKSTL K++ G  +P++G +   
Sbjct: 6   LRFNGIGKEFPGVKALSQISFEARPREVHALMGENGAGKSTLLKILGGAYLPSSGTLQIG 65

Query: 76  GQAYAPGSRGEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRFGWISHKRLRQLATAA 135
            Q     S  ++   GV ++ QEL+L+P +TVAENLFL +LP+RFG ++  +LR+ A A 
Sbjct: 66  EQTMDFKSAADSIACGVAVIHQELHLVPEMTVAENLFLGHLPTRFGVVNRSQLRKQALAC 125

Query: 136 MARVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVALLFTQI 195
           +  +  D IDPD  +G L +G +Q+VEIA+ L    HV+  DEPT+ L+ARE+  L   I
Sbjct: 126 LKGLA-DEIDPDEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 196 ERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCD-EPIQRYSSAELVNLMVGRELG 254
            RLR  G  ++Y+SHR+EE+ R+   + V +DG+ V   + +   S  +LV  MVGR++ 
Sbjct: 185 TRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFDDMNALSHDQLVTCMVGRDIQ 244

Query: 255 EHIDLGRRQLGAPLLKVDKLCRGDKVRE-VSFEVRAGEIFGISGLIGAGRTELLRLIYGA 313
           +  D  +R+ G   LKV+ L  G  +RE VS  V  GEI G+ GL+GAGRTEL RL+ G 
Sbjct: 245 DIYDYRQREQGEVALKVEGLL-GPGLREPVSLNVHKGEILGLFGLVGAGRTELFRLLSGL 303

Query: 314 DRADSGGIALGQPPQAVSIDSPKAAVRAGIALITEDRKGEGLLLTQSISANIALGNLGAV 373
            R+ +G +AL    Q + + SP+ A+ AG+ L  EDRK EG++   S++ NI +   GA 
Sbjct: 304 TRSTAGSLALCG--QTLQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAH 361

Query: 374 SRAGVLDSEA-EKALAERQIQAMRIRSAGAQQVVGELSGGNQQKVVIGRWLERDCQVLLF 432
           S  G L  +  E   A+RQI+AM++++  A+Q +  LSGGNQQK ++GRWL    +VLL 
Sbjct: 362 STFGWLLRDGWETTNADRQIKAMKVKTPNAEQKIMYLSGGNQQKAILGRWLSMPMKVLLL 421

Query: 433 DEPTRGIDVGAKFDIYGLLAELARQGKALVVVSSDLRELMLICDRIAVLSAGRLIDTFAR 492
           DEPTRGID+GAK +IY ++  LA  G A++VVSSDL E+M I DRI V+S G L     R
Sbjct: 422 DEPTRGIDIGAKSEIYQIIHNLAASGIAVIVVSSDLMEVMGISDRILVMSEGALTGELTR 481

Query: 493 DHWSQDQLLAAA 504
           D   + +LL  A
Sbjct: 482 DQADEARLLQLA 493



 Score = 89.0 bits (219), Expect = 4e-22
 Identities = 77/249 (30%), Positives = 119/249 (47%), Gaps = 19/249 (7%)

Query: 14  EVVLAASGL-GKTYAQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPTTGHM 72
           EV L   GL G    +PV    SL++  GE+L L G  GAG++ L +L+SGL   T G +
Sbjct: 256 EVALKVEGLLGPGLREPV----SLNVHKGEILGLFGLVGAGRTELFRLLSGLTRSTAGSL 311

Query: 73  TYRGQAYAPGSRGEAERLGVRMVMQELN---LLPTLTVAENLFLD--NLPSRFGWISHKR 127
              GQ     S  +A   GV +  ++     ++P  +VAEN+ +      S FGW+    
Sbjct: 312 ALCGQTLQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGWL---- 367

Query: 128 LRQLATAAMARVGLDAIDPDTPVGELGI-----GHQQMVEIARNLIGDCHVLILDEPTAM 182
           LR       A   + A+   TP  E  I     G+QQ   + R L     VL+LDEPT  
Sbjct: 368 LRDGWETTNADRQIKAMKVKTPNAEQKIMYLSGGNQQKAILGRWLSMPMKVLLLDEPTRG 427

Query: 183 LTAREVALLFTQIERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCDEPIQRYSSA 242
           +     + ++  I  L A G+A++ +S  L E+  ++ RI+V+ +G L  +    +   A
Sbjct: 428 IDIGAKSEIYQIIHNLAASGIAVIVVSSDLMEVMGISDRILVMSEGALTGELTRDQADEA 487

Query: 243 ELVNLMVGR 251
            L+ L + R
Sbjct: 488 RLLQLALPR 496