Pairwise Alignments

Query, 524 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

Subject, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  371 bits (952), Expect = e-107
 Identities = 222/493 (45%), Positives = 308/493 (62%), Gaps = 10/493 (2%)

Query: 17  LAASGLGKTY-AQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPTTGHMTYR 75
           L   G+GKT+     L  +S S   G+V AL GENGAGKSTL K++ G  +P +G +   
Sbjct: 6   LRFDGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLHIG 65

Query: 76  GQAYAPGSRGEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRFGWISHKRLRQLATAA 135
            Q  A  S  ++   GV ++ QEL+L+P ++VAENLFL +LPSRFG ++   LR+ A A 
Sbjct: 66  EQVMAFKSAADSIASGVAVIHQELHLVPEMSVAENLFLGHLPSRFGVVNRGLLRKQALAC 125

Query: 136 MARVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVALLFTQI 195
           +  +  D IDP   +G L +G +Q+VEIA+ L    HV+  DEPT+ L+ARE+  L   I
Sbjct: 126 LKGLA-DEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 196 ERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCD-EPIQRYSSAELVNLMVGRELG 254
            RLR  G  ++Y+SHR+EE+ R+   + V +DG+ V   E +   +  +LV  MVGR++ 
Sbjct: 185 ARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244

Query: 255 EHIDLGRRQLGAPLLKVDKLCRGDKVRE-VSFEVRAGEIFGISGLIGAGRTELLRLIYGA 313
           +  D   R+ G   LKVD L  G  +RE VSF VR GEI G+ GL+GAGRTEL RL+ G 
Sbjct: 245 DIYDYRPREHGEVALKVDGLL-GPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSGL 303

Query: 314 DRADSGGIAL-GQPPQAVSIDSPKAAVRAGIALITEDRKGEGLLLTQSISANIALGNLGA 372
           +RA +G + L G+P   + + SP+ A+ AG+ L  EDRK EG++   S++ NI +   GA
Sbjct: 304 ERASAGQLELCGEP---LHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGA 360

Query: 373 VSRAGVLDSEA-EKALAERQIQAMRIRSAGAQQVVGELSGGNQQKVVIGRWLERDCQVLL 431
            S  G L  E  EK  A++QI AM++++  A Q +  LSGGNQQK ++GRWL    +VLL
Sbjct: 361 HSTFGWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLL 420

Query: 432 FDEPTRGIDVGAKFDIYGLLAELARQGKALVVVSSDLRELMLICDRIAVLSAGRLIDTFA 491
            DEPTRGID+GAK +IY ++  LA QG A++VVSSDL E+M I DRI VL  G L     
Sbjct: 421 LDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQT 480

Query: 492 RDHWSQDQLLAAA 504
           R+H ++  LL  A
Sbjct: 481 REHATESNLLQLA 493



 Score = 91.7 bits (226), Expect = 6e-23
 Identities = 78/256 (30%), Positives = 127/256 (49%), Gaps = 19/256 (7%)

Query: 9   PALANEVVLAASGL-GKTYAQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVP 67
           P    EV L   GL G    +PV    S ++R GE+L L G  GAG++ L +L+SGLE  
Sbjct: 251 PREHGEVALKVDGLLGPGLREPV----SFNVRKGEILGLFGLVGAGRTELFRLLSGLERA 306

Query: 68  TTGHMTYRGQAYAPGSRGEAERLGVRMVMQELN---LLPTLTVAENLFLD--NLPSRFGW 122
           + G +   G+     S  +A   GV +  ++     ++P  +VAEN+ +      S FGW
Sbjct: 307 SAGQLELCGEPLHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTFGW 366

Query: 123 ISHKRLRQLATAAMARVGLDAIDPDTP-----VGELGIGHQQMVEIARNLIGDCHVLILD 177
           +    LR+      A   ++A+   TP     +  L  G+QQ   + R L     VL+LD
Sbjct: 367 L----LREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLLLD 422

Query: 178 EPTAMLTAREVALLFTQIERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLVCDEPIQ 237
           EPT  +     A ++  I  L A+G+A++ +S  L E+  +A RI+VL +G L  ++  +
Sbjct: 423 EPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQTRE 482

Query: 238 RYSSAELVNLMVGREL 253
             + + L+ L + R +
Sbjct: 483 HATESNLLQLALPRSV 498