Pairwise Alignments

Query, 524 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

Subject, 523 a.a., L-arabinose ABC transporter, ATP-binding protein AraG from Variovorax sp. SCN45

 Score =  334 bits (857), Expect = 4e-96
 Identities = 203/507 (40%), Positives = 310/507 (61%), Gaps = 25/507 (4%)

Query: 15  VVLAASGLGKTY-AQPVLGEVSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPTT--GH 71
           V+L   G+ KT+     L  V+L +RAGE+ A+ GENGAGKSTL K++SG+    +  G 
Sbjct: 12  VILEMRGITKTFPGVKALSNVNLGVRAGEIHAVVGENGAGKSTLMKVLSGVYPCDSYEGE 71

Query: 72  MTYRGQAYAPGSRGEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRFGWI----SHKR 127
           + + G+        ++E+LG+ ++ QEL L+P L++AEN+FL N  +R G I    ++ R
Sbjct: 72  IRFEGEVRRFRGIADSEKLGIIIIHQELALVPLLSIAENIFLGNEITRGGVIDWFAAYAR 131

Query: 128 LRQLATAAMARVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTARE 187
            R+L    +A+VGL    P T V +LG+G QQ+VEIA+ L  +  +LILDEPTA L  ++
Sbjct: 132 TREL----LAKVGLKE-PPTTLVTDLGVGKQQLVEIAKALAKEVKLLILDEPTASLNEKD 186

Query: 188 VALLFTQIERLRARGVAIVYISHRLEELQRVAQRIVVLRDGKLV--CDEPIQRYSSAELV 245
              L   +  L+ +G+A + ISH+L E+ +VA  + VLRDG  V   D   Q  S   ++
Sbjct: 187 SDALLMLLLELKRQGIASILISHKLNEIAKVADSVTVLRDGATVETMDCRAQPISEDRII 246

Query: 246 NLMVGRELGEHIDLGRRQLGAPLLKVDKL-------CRGDKVREVSFEVRAGEIFGISGL 298
             MVGR++         ++G  + +V             ++++ VS  VR GEI GI+GL
Sbjct: 247 RGMVGRDMAHRYPQRAPKIGETVFEVRDWRVHHALHADREQIKGVSLNVRQGEIVGIAGL 306

Query: 299 IGAGRTELLRLIYGADRAD--SGGIALGQPPQAVSIDSPKAAVRAGIALITEDRKGEGLL 356
           +GAGRTEL   ++G       SG + +   P  V + + + A+  GIA +TEDRKG GL+
Sbjct: 307 MGAGRTELAMSVFGRSYGQRISGSVLMHGKP--VDVSTVRKAIDHGIAYVTEDRKGLGLV 364

Query: 357 LTQSISANIALGNLGAVSRAGVLDSEAEKALAERQIQAMRIRSAGAQQVVGELSGGNQQK 416
           L + I  NI+L NL AVS + V+D+  E  +A    +A+ IR +G +Q+V  LSGGNQQK
Sbjct: 365 LEEDIRRNISLANLEAVSESAVIDTGREFKVANEYRKALNIRCSGVEQLVVNLSGGNQQK 424

Query: 417 VVIGRWLERDCQVLLFDEPTRGIDVGAKFDIYGLLAELARQGKALVVVSSDLRELMLICD 476
           VV+ +WL    ++L+ DEPTRGIDVGAK++IY ++ +LA +GK ++++SS+L EL+ +CD
Sbjct: 425 VVLSKWLFTKPELLILDEPTRGIDVGAKYEIYTIIDQLASEGKGILMISSELPELLGMCD 484

Query: 477 RIAVLSAGRLIDTFARDHWSQDQLLAA 503
           RI V++ GR +  F     SQ++++ A
Sbjct: 485 RIYVMNEGRFVAEFPVAEASQERIMHA 511



 Score = 71.6 bits (174), Expect = 7e-17
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 34  VSLSLRAGEVLALTGENGAGKSTLSKLISGLEVPT--TGHMTYRGQAYAPGSRGEAERLG 91
           VSL++R GE++ + G  GAG++ L+  + G       +G +   G+     +  +A   G
Sbjct: 291 VSLNVRQGEIVGIAGLMGAGRTELAMSVFGRSYGQRISGSVLMHGKPVDVSTVRKAIDHG 350

Query: 92  VRMVMQE---LNLLPTLTVAENLFLDNLP--SRFGWISHKRLRQLATAAMARVGLDAIDP 146
           +  V ++   L L+    +  N+ L NL   S    I   R  ++A      + +     
Sbjct: 351 IAYVTEDRKGLGLVLEEDIRRNISLANLEAVSESAVIDTGREFKVANEYRKALNIRCSGV 410

Query: 147 DTPVGELGIGHQQMVEIARNLIGDCHVLILDEPTAMLTAREVALLFTQIERLRARGVAIV 206
           +  V  L  G+QQ V +++ L     +LILDEPT  +       ++T I++L + G  I+
Sbjct: 411 EQLVVNLSGGNQQKVVLSKWLFTKPELLILDEPTRGIDVGAKYEIYTIIDQLASEGKGIL 470

Query: 207 YISHRLEELQRVAQRIVVLRDGKLVCDEPIQRYSSAELVNLMVGRELGEHI 257
            IS  L EL  +  RI V+ +G+ V + P+   S   +++ +V      H+
Sbjct: 471 MISSELPELLGMCDRIYVMNEGRFVAEFPVAEASQERIMHAIVSSGSSVHV 521