Pairwise Alignments

Query, 301 a.a., putative transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 321 a.a., HTH-type transcriptional activator RhaS from Methylophilus sp. DMC18

 Score =  201 bits (512), Expect = 1e-56
 Identities = 109/280 (38%), Positives = 164/280 (58%), Gaps = 2/280 (0%)

Query: 15  SLIRSLTTRPGFVPTLLPQVQVLSWDHYVASSPQIYEPSLMIVAQGSKLARLGPRTLEYG 74
           SL+ +LT + GF  T L  V+++ W+  +A SP  YEPS++ V QG K+  LG    +Y 
Sbjct: 16  SLLSALTPKEGFTLTALDGVKLMRWNRSIARSPVFYEPSIVFVCQGRKVGYLGGEVYQYN 75

Query: 75  AGHYLVQALSVPFMCETFATREAPLLGVAVGIDRGVLGELVQSMGLAPDAEVQAQTPQSM 134
              +L+ ++ +PF  ET A+ + PLL +++ I+  V+ EL+  M L     +Q      +
Sbjct: 76  PQQFLILSVPLPFESETIASPDEPLLAISIRINLSVISELL--MSLEHTTPMQVNGKSGI 133

Query: 135 TSAALDAPMRESVERLLHCLQDPLDAKVLGPARVREVLYTALRGPQAGVLRALVEQQGHF 194
            S ALD  +  +V RLL CLQ   +A VLG A +RE+ Y  L   Q+  + A      + 
Sbjct: 134 ISTALDKQLSNAVVRLLECLQSKTEAAVLGQAIIREIHYRLLTSAQSSAILAAHSTHSNL 193

Query: 195 ARIGAALAHLREHYAEPLSVEALAARANMSVSTFHEHFKRCTDMAPMQYLKRLRLLKAQQ 254
            RI  AL  +   YA  L+V+ LAA + MSV +FH  F+  T  +P+QYLK+ RL KA+ 
Sbjct: 194 GRISKALRLIHAEYANALNVDTLAAVSAMSVPSFHAAFRDVTATSPIQYLKKTRLHKARL 253

Query: 255 MLIGEGLGVAQAAHRVGYQSTSQFSREYKRQFERSPGDEL 294
           +++ +G+    AA +VGY+S SQFSRE+KR F RSP +E+
Sbjct: 254 LMVQDGMNATLAATKVGYESASQFSREFKRMFGRSPMEEV 293