Pairwise Alignments

Query, 281 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 278 a.a., HTH-type transcriptional activator RhaS from Pseudomonas sp. DMC3

 Score =  140 bits (352), Expect = 4e-38
 Identities = 86/257 (33%), Positives = 125/257 (48%), Gaps = 2/257 (0%)

Query: 20  VEMLHARYYQQRFAPHVHEGYVFTVIESGAQRFWHRGSEHLAPVGSMVLINPDELHTGAT 79
           +E + A +    + PH H+ ++  V E G Q+F  R   H +  G + L+ P E+H G  
Sbjct: 17  IESIRAHFRGHAYDPHWHDSFLVGVTEQGVQQFNCRRVRHRSTPGHVFLLEPGEIHDGHA 76

Query: 80  AHEAGWRYRGFYPEHERVTGVLDEL--ELGRHGMPSFKDSVIHDPALALAFSQLHQLSEA 137
             E G+ Y   Y +   +   L  L  E      P F D++ HDP L+ A  Q   +   
Sbjct: 77  PTEDGFTYSMLYLDPHWLERELHALFEEAPADSQPGFADTLSHDPHLSTAIVQAFHVLHD 136

Query: 138 SASALQQQTAWRQAVLALVQRHGQCAEPSAPGHEPLAVARARELLESQLADPPSLEALAA 197
               + +QTA    + +L +              PL    AR+ L +   +   L+ LA 
Sbjct: 137 GDLRIVRQTALDGLLASLTRHLDWRKRQDFDPRLPLVAQVARDYLHAHTYEDIGLDDLAQ 196

Query: 198 AVNLSPFHFARVFRQATGLPPHAWLKQRRLARAREMLKHGLAASQVAFDLGFADQSHLSR 257
           A  +  F   R F+ A GL PHA+L Q RLA+AR++L  G   +QVA  LGFADQSHL R
Sbjct: 197 ACGVDRFRLTRAFKAAFGLAPHAYLIQLRLAKARQLLARGETPAQVASVLGFADQSHLGR 256

Query: 258 QFKQAYGVTPGAYRQAC 274
            F++AY +TP  YR+ C
Sbjct: 257 WFRRAYQLTPADYRKRC 273