Pairwise Alignments

Query, 358 a.a., putative Periplasmic sugar-binding protein from Pseudomonas putida KT2440

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 46.6 bits (109), Expect = 9e-10
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 28/183 (15%)

Query: 66  LTLTQARAILSAPQRPDYLVLVNEQYVAPEILRLSRGTGVKLLLVNNGLTA----SQRLS 121
           + L +  AI+ AP     LV V         L+ +   G+K++ ++N L      S+ L 
Sbjct: 90  MILAKVNAIVIAPADSKALVTV---------LKKASDAGIKVVNIDNRLDPDVLKSKNLD 140

Query: 122 IEGQPDKYAEPLGTLMSNDEQAGFQMLHLMLAQLPRDAGPVDLVAFAGVKTTPASQLRVE 181
           I              +  D + G +++   LA+       V ++   GV TT  +Q R  
Sbjct: 141 IP------------FVGPDNRKGSKLVGDYLAKQLASGDKVGIIE--GVPTTTNAQQRTA 186

Query: 182 GMRRALADFPQVRLRQVVYGGWNRQRAYEQAKQLLERYPATRLVWSANDQMAFGAMQAFE 241
           G + A+ D   +++     G W   +  + A  +L  YP  + + + ND MA GA+ A  
Sbjct: 187 GYKDAM-DAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVR 245

Query: 242 EAG 244
            AG
Sbjct: 246 AAG 248