Pairwise Alignments

Query, 257 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 253 a.a., helix-turn-helix transcriptional regulator from Serratia liquefaciens MT49

 Score =  142 bits (357), Expect = 9e-39
 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 35  HSHTKHQLIYAIKGLMIVESGNECWTVPPSRGVWMPCGQVHAIRCVGDVKMRSVFVRSDA 94
           H H   Q+     G+M +E+    W +      W+P    H     G+V   S+++    
Sbjct: 20  HQHASGQIYLLTHGMMALETRERQWAMTAGSIGWLPPNCAHQALACGNVVGWSLYLPESY 79

Query: 95  ATGLPLQSKAISISPLLSELIKASVGFTAPFAE---DSREARVMRLILDEICVLPTLPLK 151
              LP Q     +SP  S LI+A +   APFA    D  + R++R++LDEI V  ++PL+
Sbjct: 80  CATLPAQPH---LSPA-SALIQALMERIAPFAGQELDPAQQRLLRVLLDEISVEESVPLQ 135

Query: 152 LSQPSDQRLRVICTALHERPEDNATVADWGLRLGVDEKTIQRLFRKETGMTFGQWRQQAR 211
           L  P D RL  I  AL   P    T +DW    GV  +T+ R F  ETG+TF +WRQQAR
Sbjct: 136 LPLPQDARLLKIARALLNEPASARTQSDWAAWAGVSVRTLSRRFISETGVTFARWRQQAR 195

Query: 212 LMQALERIALGERIIDVAGALGYDSPSAFASMFKRQFGTTPSQFF 256
           ++++LE ++ GE +  +AG  GYD+ SA+ + F+++FGTTP  +F
Sbjct: 196 VIRSLEPLSRGESVGRIAGECGYDNVSAYIAAFRQRFGTTPGLYF 240