Pairwise Alignments

Query, 797 a.a., putative usher protein from Pseudomonas putida KT2440

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  106 bits (265), Expect = 5e-27
 Identities = 154/664 (23%), Positives = 259/664 (39%), Gaps = 78/664 (11%)

Query: 152 SFGALFNYDLYINDTDEGGTYLAAWNELRLFDSWGTFSSTGQWRQSFKGAQADDTRRGFM 211
           S G   + DLY+N     G  L  W             ST  WRQ  +G      +  + 
Sbjct: 193 SSGRYTSNDLYLNS----GINLGEWR----------LRSTQSWRQGSQG------KTEWT 232

Query: 212 RYDTTWRFTDEQRLLTYEAGDFVTGALPWSSSVRVGGVQLSRDFAARPDLVTYPLPAFAG 271
           R  T  +      L     G+  T    + S V + GV+++ D     D      P   G
Sbjct: 233 RAQTYAQRDIPGTLANLTIGETFTDREVFRS-VPISGVRVASDMGMLADNQRGYAPIIRG 291

Query: 272 EAAVPTSLDLFINGFKSSTTELQPGPYTLTNVPFINGVGEAVVVTTDALGRQVSTTLPFY 331
            A     ++++ +G+   +T +  GPY + ++    G GE  VV T+A G+      P+ 
Sbjct: 292 VAQSRAKVEIWQHGYPIYSTYVSAGPYAIDDLSTA-GSGELEVVVTEADGQVRRFIQPYS 350

Query: 332 VTSSLLQKGLSDYSVAAGSLRRDYGVRDFSYGPGIASGSLRYGLSDMFTLETHAETAESL 391
             S+LL+ G+  YS   G     Y        P +  G+L  G     T+      +E  
Sbjct: 351 TMSNLLRPGVWRYSATVGR----YNPSSDLETPLLWQGTLAVGSYWDTTVYGGLMASEFY 406

Query: 392 MLGGLGGNMRVGNFGVLNAALAQSRFEGDKGHQ-------VALGY------QYNSQRIGF 438
             G LG +  +G+ G +   + Q+    D  H+        AL Y      Q N +  G+
Sbjct: 407 RAGNLGFSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFTTQTNLRFAGY 466

Query: 439 GYQRLQRHGDYADLSRVVSPDMQLSKS---------------SEQVTLSVNLNEYGSIGA 483
            Y   Q + D+ ++ R  S D   S S               +  +TL+++  +Y    A
Sbjct: 467 RYST-QGYRDFDEVVRQRSQDTTFSGSRRSRLEASVHQSLGRTSSLTLTLSQQDYWRSNA 525

Query: 484 GYFDVRAGDGTRTRLINLSYSKPLWGSSSVYLSANREVGDSQWAVQAQLVIPFDLHGTLA 543
                +    T+ R +  +    L+ S S+    +R   D Q+ +   + + F       
Sbjct: 526 TQRQYQFNFNTQHRGVGYN----LFASQSL---TDRYGNDRQFGLSVTVPLHFGHRANAT 578

Query: 544 LSMERSNEGETLQRVNYSRAVPAGVGVGYNLGYAAGSDRDAYRQADVTWRLQS----VQL 599
             ++ +  G +       RA  +G      L Y+    RD + +      L        +
Sbjct: 579 FDLQHNANGYS------QRATLSGSDSARALSYSTSLSRDEHARKTAALSLGHQAPYASV 632

Query: 600 QAGTYGSSGEMTRWADASGSLVWMDAGVFAANRIDDAFVVVSTAGYADVPVRYENQEIGR 659
            AG   +    +   +ASG+++    G+     + D   ++   G A+V +  +N    R
Sbjct: 633 SAGYTEADNYRSLSLNASGAVLLHADGLEFGRYLGDTAALIEVPGVANVGL--QNATGTR 690

Query: 660 TDAKGHLLVPYSSGYYRGKYEIDPMNLPPDVLAPDVEQRVAVRRGSGYLLEFPLKRVMAA 719
           T+++G+ L+PY   Y      ++   L PDV   +   +V  R+G+     F  +RV   
Sbjct: 691 TNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEARRVSRL 750

Query: 720 SVELVDGNQQVLKLGSRVTHAESGTQ-AVVGWDGLVYLENLSSHNRLQVAL--EGGGHCE 776
            + L D   Q L  G++V  AE+GTQ  +VG  GLV L N S    LQV+   +    C+
Sbjct: 751 VLTLHDTQGQPLPFGAQVL-AENGTQLGMVGQAGLVMLTNPSQEQPLQVSWGEQPNAGCQ 809

Query: 777 VAFD 780
           V  D
Sbjct: 810 VHLD 813