Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 33/233 (14%)

Query: 122 LGNSG--STVNRKLSLLSMVLKTAVNHNWLLSVP--RMIRRKEGKHRIRWMNTEEEGNVL 177
           L N G  ++ NR+L++     + A+    + + P  R++  ++    I+ ++ ++  ++L
Sbjct: 69  LSNRGKATSANRRLTVFKRYYRWALRERRIAADPSIRLMPARQMPRAIKTLSEKQVDDLL 128

Query: 178 KACQHLGLNCLHDFIIVAV--DTGFRRAELLGLSAPDFQ--EGMIHLYAGQTKNGDARAI 233
            A        L D  ++ +   +G R +EL+ L A D    +G++ +     K    R +
Sbjct: 129 AAPDVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLG---KGSKERLV 185

Query: 234 PATSRVARILHR--RRMNLTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIV--------- 282
           P      R + R          +G     L   + T R   GM     +I+         
Sbjct: 186 PFGGEARRWIERYLEESRPAILDGQQTPDL---FVTARG-AGMTRVMFWIIVKKHATAAG 241

Query: 283 -------HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQ 328
                  H LRH  A+ L+  GV L +VQ  +GH +I+TT  Y H+A E L Q
Sbjct: 242 IHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQ 294