Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 356 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)

Query: 123 GNSGSTVNRKLSLLSMVLKTA---VNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKA 179
           G + +T+ +++S L+  ++ A        +  +P          R RW+   E   +L A
Sbjct: 143 GKAPATIRKEISFLAAAIRWAKGDAGGGAVFELP-----SPPPPRDRWLTRPEFMRLLDA 197

Query: 180 CQ---HLGLNCLHDFIIVAVDTGFRRAELLGLSAP--DFQEGMIHLYAGQTKNGDARAI- 233
            Q   HL       F+ +A+ TG R+  +L L+ P  DF  G I L  G    G ARA+ 
Sbjct: 198 AQPHPHLVT-----FLHLALATGARKEAILELTWPQVDFSAGRIFL--GNKPGGKARAVV 250

Query: 234 PATSRVARILHRRRMN------LTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRH 287
           P T  +  +L  +         +  + G  V +++  +AT     G+++      H LRH
Sbjct: 251 PMTKSLRTVLQAQNQRREDSGYVVEYGGAKVGNIKKAFATAARNAGLDD---VTPHDLRH 307

Query: 288 TCASRLVQRGVPLASVQHWMGHKNINTTLR-YAHLAPENLMQARNALE 334
           T A  +   GV +  +  ++GH +   T R YA  +P++L  A  ALE
Sbjct: 308 TAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDAAAALE 355