Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 363 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 83/331 (25%), Positives = 126/331 (38%), Gaps = 37/331 (11%)

Query: 15  GSRNDRYRQTFATEEEAKADEARELARRATLPKAVRGEGTGTISPLKSRKTLQEAYDLTF 74
           G    R R+ FAT+ EA A E      R T+ ++   E    +      ++L+E  DL F
Sbjct: 19  GREGKRVRKQFATKGEALAFE------RFTMEES---ENKPWLGEKADNRSLREIIDLWF 69

Query: 75  RLEWKGGKSEKTMTLNGGNVLKALGADTL--LSDITTEAITEMVLEFEDLGNSG------ 126
            L  +     K M      +   LG      LS        E+ L  +    SG      
Sbjct: 70  SLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLAGQMTDASGIPLSVV 129

Query: 127 --STVNRKLSLLSMVLKTA--VNH----NWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLK 178
              TVN +   LS V  T   + H    N L  +P     K  +  + ++   E   VL 
Sbjct: 130 KPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTF---KIAQQELAFLAPNEIKRVLD 186

Query: 179 ACQHLGLNCLHDFIIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIPATSR 238
           AC       L     + + TG R +E  GLS    Q     +   +TK    R +P +  
Sbjct: 187 ACAESANPHLLLVTKICLATGARWSEAEGLSGQ--QVTPYRITYTRTKGKKNRTVPISRE 244

Query: 239 VARILHRRRMNLTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRGV 298
           +   + R+        G   S  R  +       G++       H+LRHT AS  +  G 
Sbjct: 245 LYDEIPRK-------SGKLFSPCRKTFERAINRTGIQLPDGQCTHVLRHTFASHFMMNGG 297

Query: 299 PLASVQHWMGHKNINTTLRYAHLAPENLMQA 329
            +  ++  +GH +I  T+ YAH AP++L  A
Sbjct: 298 NILVLRDILGHADIKMTMIYAHFAPDHLEDA 328