Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dianthicola ME23

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 198 TGFRRAELLGLSAPD--FQEGMIHLYAGQTKNGDARAIP----ATSRVARILHRRR---M 248
           TG R +EL+GL+  D   ++G++ +     K    R +P    A   + + L   R   +
Sbjct: 146 TGLRVSELVGLTISDVSLRQGVVRVIG---KGNKERLVPLGEEAVYWLEQYLEYSRPWLL 202

Query: 249 NLTTFEGLTVSSLRHQ------WATLRAYMGME--EDPQFIVHMLRHTCASRLVQRGVPL 300
           N  T + L  S+   Q      W  ++ Y  +   +  +   H+LRH  A+ L+  G  L
Sbjct: 203 NGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHVLRHAFATHLLNHGADL 262

Query: 301 ASVQHWMGHKNINTTLRYAHLAPENL 326
             VQ  +GH +++TT  Y H+A E L
Sbjct: 263 RVVQMLLGHSDLSTTQIYTHVATERL 288