Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 308 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 73/275 (26%), Positives = 114/275 (41%), Gaps = 43/275 (15%)

Query: 93  NVLKALGADTLLSDITTEAITEMVLEFEDLGNSGSTVNRKLSLLSMVLKTAVNHNWLLSV 152
           ++L   G +  LS+     + + +    D G S  TV   L +L M+LK  V + WL   
Sbjct: 37  HILPEFGNECQLSE---SRVQDFIFRKLDQGLSQKTVKDMLIVLKMILKFGVKNQWLRDS 93

Query: 153 PRMIR--RKEGKHRIRWMNTEEEGNVLKACQ-HLGLNCLHDFIIVAVDTGFRRAELLGLS 209
           P  IR   +  K  I  ++  ++  +++  Q H     L   I + + TG R  E+  LS
Sbjct: 94  PLDIRFPTEREKQHIEVLSKSQQKKIMQHIQQHFTFRNLG--IYICLSTGLRIGEVCALS 151

Query: 210 APDFQEGM-----------------------IHLYAGQTKNGDARAIPATSRVARILH-- 244
             D    M                       + L   +TKN   R IP +  + R+L   
Sbjct: 152 WEDVDTDMGIIRVSKSIQRIYTIENEIRKTELILDTPKTKNS-IREIPISRDLLRLLKPI 210

Query: 245 RRRMNLTTFEGLTVSSLRHQWATLRAYMG--MEEDPQ--FIVHMLRHTCASRLVQRGVPL 300
           ++ MN   F  LT      +  T R+Y    MEE        H LRH+ A+R ++     
Sbjct: 211 KKIMNPAFFV-LTNEQKPTEPRTYRSYYQKFMEELNMTGLKFHGLRHSFATRCIESNCDY 269

Query: 301 ASVQHWMGHKNINTTLR-YAHLAPENLMQARNALE 334
            +V   +GH NI+TTL  Y H    N+ Q + A++
Sbjct: 270 KTVSVLLGHSNISTTLNLYVH---PNMEQKKKAID 301